Agelaius tricolor (tricolored blackbird): 139600742
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Entry
139600742 CDS
T10815
Symbol
CROCC
Name
(RefSeq) rootletin isoform X1
KO
K16469
rootletin
Organism
atrc Agelaius tricolor (tricolored blackbird)
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
atrc03037
]
139600742 (CROCC)
Cilium and associated proteins [BR:
atrc03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
139600742 (CROCC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rootletin
CCDC171
CCDC110
CCDC39
Motif
Other DBs
NCBI-GeneID:
139600742
NCBI-ProteinID:
XP_071305259
LinkDB
All DBs
Position
Unknown
AA seq
1747 aa
AA seq
DB search
MASLLSLQEENRILQQELSRVEDLLAQSRAERDELAIKYNALSERLEQSLRLEPEEAAES
RSLAQHNIELRRLLEEEQAAYKRKLQAYQEGQQRQAQLVQKLQAKVLQYKKKCGEVEQQL
LEKATELEQERLTIQLDASGSQPEEESSNELENALIRLEEEQQRSSSLVQVNSMLREQLE
QANVANAALSEDIRKLTADWARARDELEQREAEWRREEESFNTYFSNEHSRLLTLWRQLV
AFRRHFGEMKATTERDLSELGHEVSRTGRAAHAACLHLAANLRLAESQAGAARERQELRL
EQLQEQLAARARDAELEKNTLAARLAELTEALERRRSEDEEKEQAVEALTLQLRELEAAR
AREPTPEQVQALRSELELLRRTLHEITQAVLADDPESPAPAVSLPCPPVSSPCPAVSPLR
SLSASAAAAAVHAALSRRQLQLQEARSQAEAGREAAGSLRRELGMLEQRLEQLGAEAGSC
RRAQEEAQREGLQLRAQAEGLRRELCRAEAALAEEQQRAGALQQEREQLRRRSESLQDCR
DQAARDAQAAHEQLQHSQQQVQELEAQRAQAQQELLEAREELSRALLEVELARGEQEALE
EALGKAQGSCGELAEARRAAEAEESRLRDALAKTSELAAGLARDKAELGRRLERLEQERE
RGRLRSRELCRELALLRTRLESGPRPGSERRDLERPRGDPRDDGRGLREELRELRGVHER
LRHSLGQAVQEQSAAGEALARARAEQERLRAEQERLGRTQAALAQDGAGLAVQLAAAQRQ
ERHRHREAAGLRSEKEGLESAVFQLQQELAQLQARNQQLEAQGRTLAQAKEALEAELGVA
RRERAQELRERRQAVAVAEAAAVTAALQSARDAHQEQLEQLQREKEELEAERGRLVQEHE
ELVADLAAARQQRQSEKQQALALQEEERVALAGTLAGLQQSLDEATAELEQRRREVRGHQ
EKEQALAAELRSLRARAEEAALSHEREARTLRDQAAAAAKQRDSALREAEEARAQLRAGA
EARAAARRELLEAQREARDSREGRDTERRRAQEARRALGDAAREKEALQRSNEELRAALR
RAEGERISLKRSGEDKEQRLALLEAARAAAEREVSELRAALRGLERARLESRRELQELRR
QVKELDSENSRRGRELGELQARVALEEQREQRSRREASGLRQKVAESEAGTEAARKELQQ
LQQRLAVAEQEFRRREQELSRSLEEARGNEKKLLADARNLQLKVEAARAEVAELGLRLSA
AQGRAQGLEAELARGEEQRRATESRLGGLQATLRRTVAVARAKGGGPEGSGSPGSVPDPE
ADPEALRAALREFLQELQDAQREREELRGQLGSLGRRLAEAEAERDSAGARAQRLQKLLD
ESEQGRRELSGARASLLLQDETLRRSQRECRGLRERLSALESGMRAAERERRAGQPRGEC
QAARVGTAACPAHPGSTPSFRRLQEKLGELEEARQRLELCESRSARLELQRRALEAELGR
ARRALAERDAEAREARERAEQLRTQLAQAESRSGPFPVPPGSGSKGEAPAGSPLHERLLQ
LQNALAAGETDRRLLQEGLEEARRALAEARREKGMLWEQLREQRELGMLREPGMLRDLGM
PREQGMLRDLGMPRELGMPPEPSQDRQQEERDPPGQAGPAQLPAGPDLRAGPDPPAGSAE
RELEEARKRIQVLRAQVSALELRARPLPEAPAELQRELERLRLGRGSLEEQIVLLKEQEL
QRHPTGT
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgctgctgtccctgcaggaggagaacaggatcctgcagcaggagctgtcccgc
gttgaggacctgctggcccagagccgggctgagcgcgatgagctggccatcaagtacaat
gccctcagtgagcggctggagcagagcctgcggctggagccggaggaagcggccgagagc
cggagcctggcccagcacaacatcgagctgcggaggctgctggaggaggagcaggctgcc
tacaagaggaagctccaggcctaccaggagggccagcagcgccaggcccagctggtgcag
aagctccaagccaaggtgttgcagtataagaagaaatgtggggaagtggagcagcagctg
ctggagaaggcgacggagctggagcaggagaggctgacgatccagctggatgccagcggc
tcccagcccgaggaggagagcagcaacgagctggagaacgccctgatccgcctggaggag
gagcagcagaggagcagcagcctggtgcaggtgaactcgatgctgcgggagcagctggaa
caggccaacgtggccaacgcggcgctgagcgaggacatccggaagctcacggcggactgg
gcacgggccagggacgagctggagcagcgggaggcggagtggaggcgggaggaggagtcc
ttcaacacctacttcagcaacgagcacagccggctcctgaccctctggcggcagctggtg
gccttcaggcgccacttcggggagatgaaagccaccaccgagagggacctgtcggagctg
ggccacgaggtgtcgcggacgggccgcgctgcccacgccgcctgcctgcacctggccgcc
aacctgcggctggccgagagccaggcgggggcggcccgggagcggcaggagctgcgcctg
gagcagctgcaggaacagctggcggcgcgggcgcgggacgcagagctggagaaaaacacc
ctggcagccaggctggcggagctgacggaggccctggagaggcgccggagcgaggacgag
gagaaggagcaggcggtggaagcgctgacgctgcagctgcgggagctggaggccgcgcgt
gcccgggagccgacgccggagcaggtgcaggctctgcgctccgagctggagctgctgcgc
cggacgctgcacgagatcacccaggcggtgctggcagatgaccccgagtcccctgcgcct
gctgtgtccctcccatgtccccccgtgtcctctccgtgtcctgctgtgtcccctctccgc
agcctctctgccagcgccgccgctgctgctgtccatgcagccctgagccggcgccagctc
cagctgcaggaggcccggagccaggcggaggcgggccgggaggcggccgggagcctgcgg
cgggagctgggaatgctggagcagcggctggagcagctgggagccgaggccgggagctgc
cggcgggcgcaggaggaggcgcagcgggaggggcttcagctgcgggcccaggctgagggg
ctgcgcagggagctgtgccgcgcagaggcggcgctggcggaggagcagcagcgggcgggg
gccctgcagcaggagcgggagcagctgcggcgccgcagtgagagcctgcaggactgccgg
gaccaggctgcccgcgacgcccaggctgcccacgagcagctgcagcacagccagcagcag
gtgcaggagctggaggcacagcgggcacaggcacagcaggagctgctggaggcgcgggag
gagctgagccgggctctgctggaggtggagctggcccggggcgagcaggaggcgctggaa
gaggccctgggcaaggcgcagggcagctgcggggagctggcggaggcccggcgggcggcg
gaggcggaggagtcgcggctgcgggacgcgctggccaagaccagcgagctggcggccggg
ctggcccgggacaaggcggagctgggccggcggctggagcggctggagcaggagcgggag
cggggccggctgcgcagccgggagctgtgccgggagctggcgctgctgcggacacggctg
gagagcggcccccggcccggcagcgagcggcgggacctggagcggccacggggagacccc
cgggacgacgggcgggggctgcgggaggagctgcgggagctgcgcggggtccacgagcgg
ctgcgccacagcctgggccaggcggtgcaggagcagagcgcggcgggcgaggcgctggcg
cgggcgcgggcggagcaggagcggctccgggcggagcaggagcggctgggccggacccag
gcggcgctggcccaggacggggcgggcctggccgtgcagctcgcggctgcccagcgccag
gagcggcaccgccaccgcgaggccgccgggctcagatcagagaaggaggggctggagagt
gccgtgttccagctgcagcaggagctggcccagctccaggcccgcaatcagcagctggag
gcccaaggccggacactggcccaggccaaggaggcgctggaggcggagctgggcgtggcg
cggcgggagcgggcgcaggagctgcgggagcggcgccaggcggtggcggtggccgaggcg
gccgcggtgacagcggcgctgcagagcgcccgcgacgcccaccaggagcagctggagcag
ctccagcgtgagaaggaggagctggaggctgagcggggccggctggtgcaggagcacgag
gagctggtggccgatctggcggcagcgcggcagcagcgccagagcgagaagcagcaggct
ctggcacttcaggaggaggagcgggtggccctggcagggacactggcagggctccagcag
agcctggacgaggccacggccgagctggagcagcggcggcgagaggtcaggggccaccag
gagaaggagcaggccttggccgcggagctgcgctcgctgcgggcgcgggcggaggaggcg
gcgctgagccacgagcgggaggcgaggacgctccgggaccaagcggcagcggcggccaag
cagcgggacagcgccctgcgggaggcggaggaggcgcgggcgcagctgcgggcgggggcc
gaggcgcgggcggcggcgcggcgggagctgctggaggcgcagcgagaggcccgggacagc
cgcgagggccgcgacaccgagcggcggcgggcgcaggaggcgcggcgggcgctgggcgat
gcggcccgcgagaaggaggcgctgcagcgctccaacgaggagctgcgggcggccctgcgg
cgcgccgagggagagcgcatcagcctgaagcgctccggggaggacaaggagcagcgtctg
gcgctgctggaggcggcgcgggcggcggccgagcgggaggtgtcggagctgcgggcggcg
ctgcgggggctggagcgcgcccgcctggagagccgccgggagctgcaggagctgcgccgc
caggtgaaggagctggacagcgagaacagccggcggggccgggagctgggggagctgcag
gcgcgggtggccctggaggagcagcgggagcagcgcagccgccgcgaggcctcggggctc
aggcagaaagtggccgagagcgaggccggcaccgaggctgccaggaaggagctgcagcag
ctgcagcagcgcctggcggtggcggagcaggagttccggcggcgggagcaggagctgtcc
cgcagcctggaggaggcgcggggcaatgagaagaagctgctggcggacgctcggaacctg
cagctcaaggtggaggcggcgcgggccgaggtggccgagctggggctgcggctgagcgcg
gcgcagggccgggcgcaggggctggaggcggagctggcccgcggcgaggagcagcgcagg
gccaccgagtcccgcctgggcggcctccaggccaccctgcgccgcacggtggccgtggcc
agggccaagggcgggggcccggagggttcgggcagccccggctccgtcccggatcccgag
gccgatcccgaggcgctgcgggcggcgctgcgggaattcctgcaggagctgcaggacgcg
cagcgggagcgggaggagctccgggggcagctgggcagcctgggccggcgcctggcggag
gcggaggcggagcgcgacagcgccggggcccgagcgcagcggctccagaaactgctggac
gagagcgagcaagggcggcgggagctgagcggggcccgcgcgtcgctgctgctgcaggat
gagaccctgcggcgctcgcagcgggaatgccgggggctgcgggagcgcctgagcgccctg
gagagcgggatgagagcggcagagagggagcggcgggcgggacagccccgtggggagtgt
caggcagcccgggtgggcacggcggcgtgcccggcacatcccggctccacgccctcattc
cggcggctccaggagaagctgggcgagctggaggaggcccggcagaggctggagctgtgc
gagagccgcagcgcccggctggagctgcagcggcgggcgctggaggcggagctgggccgg
gcccggcgggctctggccgagcgggacgcggaggcgcgggaggcgcgggagcgagcggag
cagctccgcacgcagctggctcaggccgagtcccgctcggggccgttcccggttccgccg
gggagcggctccaagggggaggctccggccgggtccccgctccacgagcggctcctgcag
ctccagaatgcgctggccgcgggcgagacggaccggaggctgctccaggaggggctggag
gaggcgcggcgggcgctggcggaggcacggcgggagaagggaatgctgtgggagcagctg
cgggagcagcgggagctgggaatgctgcgggagccggggatgctccgggatctgggaatg
ccgcgggaacagggaatgctccgggatctgggaatgccgcgggagctgggaatgccgccg
gagccctcccaggaccggcagcaggaggagcgggaccctcccggccaggctggacccgcg
cagctcccggcagggccggatctccgggcggggccggatccccccgcgggctcggccgag
cgggagctggaggaggctcggaaacgcatccaggtgctgcgggctcaggtgtcagcgctg
gagctccgggcccggccgctccctgaggcacccgcggagctgcagcgggagctggagcgg
ctccggctcggccgcggcagcctggaggagcagatcgtgctgctcaaggagcaggagctg
cagcgacatcccaccggaacttag
DBGET
integrated database retrieval system
