Agelaius tricolor (tricolored blackbird): 139601365
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Entry
139601365 CDS
T10815
Symbol
DDX20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atrc03041
]
139601365 (DDX20)
Enzymes [BR:
atrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139601365 (DDX20)
Spliceosome [BR:
atrc03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
139601365 (DDX20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_30
AAA_19
CMS1
Motif
Other DBs
NCBI-GeneID:
139601365
NCBI-ProteinID:
XP_071306452
LinkDB
All DBs
Position
Unknown
AA seq
763 aa
AA seq
DB search
MAAPMEAEGRFRTRDVLLPGGPSDFGSLLLSPPVLAGLEAAGFHRPSPVQLKAIPLGRCG
LDLIVQAKSGTGKTCVFATIALDAVLLESPATQILILAPTREIAVQIHAVITTIGIKMEG
LECHVFIGGTPLSQDRSRLKKCHIAVGSPGRIKQLIELDYLNTASVRLLVLDEADKLLEE
GSFQEQVNWIYSSLPVNKQMLAVSATYPESLAAALTRYMREPTFVRLNPTDPALLGLKQY
YKIVNSHPLPHKTFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLAEILTSRGFPAECI
SGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVINLDVPLDWETYMHRIGR
AGRFGTLGLAVTYCCRGEEENTMMKIAQKCNLQLLPLPEPIPPGMMEQFEDGQVEVKPAV
PTAPGVNCDTVCPKPEQPELQPVQNGFPDIPQPPSNLPRDNSSVERPKKTPKQKQTKKCT
NPAKVEKNRAPQTSSCHTEQRNQVKAISRRDGQHSTQAPDEEALKKNLPKIPCLSSFKTQ
LTSPWSFSDFVEDYDYFIKEGSEREVEILRSYSGPGEQRGLPRNGDVEWEEMEYHPEAAA
DEAESADSDGSESSRGSFNSRANNSCSEAFSDTQEPSPVPPARQGPPGFCPTPEKPQEPS
HSPRQKEVKKKVPKQSAKAKRSHKHQSCSPAMSRAEEEQSCSSWEDAAHQGWSSEHYWRC
YYEAWHSYYSAVSQYSRGYWHLGCIRAYHTNSVYLQELLRDGH
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcccatggaggccgagggccggttccgcacccgggacgtgctgctgcccggc
ggcccctccgacttcggctctctgctgctgtcgccgcccgtgctggcggggctggaggcg
gccggcttccatcggccgtccccggtgcagctgaaggccatcccgttagggcgctgcggg
ctggatctcatcgtgcaggccaagtctggcaccggcaagacctgcgtgttcgccaccatc
gccctggacgccgtgctgctggagagccccgccacgcagatcctgatcctggctcccacg
agggagatcgctgtgcagatccacgccgtgatcacgaccatcggcataaaaatggaaggc
ttggaatgccacgtgttcatcgggggcactcctctgagccaggacagaagcaggctgaag
aagtgccacatcgctgtgggctccccagggcggatcaagcagctgatcgagctggattac
ctgaacacggccagcgtgcggctcctggtgctggacgaggcggacaagctgctggaggag
ggcagcttccaggagcaggtcaactggatctactcctccctgcctgtcaataagcagatg
ctggcagtgtcagccacctaccccgagtccttggctgctgctctcaccaggtacatgagg
gagcccacgtttgtcaggctgaaccccacggacccagccctccttgggctgaagcagtac
tacaaaattgtgaattcccatcccctcccacataaaacctttgaggaaaaaacccagcac
ctgcaggagttgttcagcaagattcctttcaaccaagccttagtcttctcaaatttgcac
agcagggctcaacatctggctgaaatactgacatccagaggcttccctgctgagtgcatt
tcaggcaacatgaatcaaaatcagcgacttgatgccatggctaaattaaagcaattccac
tgcagagttctgatttccacagacttgacatctcgtggaattgatgctgagaaggtgaac
ctggtcatcaacctggacgtgcccctggactgggagacctacatgcaccgcatcggccgc
gccgggcgcttcggcaccttggggctggctgtcacctactgctgccgtggggaggaggag
aacaccatgatgaaaattgctcagaagtgcaacctgcagctgcttcctctgccagagcca
atcccccctggaatgatggagcagtttgaggatgggcaggtagaggttaaacctgcagta
cccacggctcctggggtgaactgtgacactgtgtgtcccaaaccagagcaacccgagctg
cagcctgtccagaatggctttccagacattcctcagcctccctctaatcttccaagggat
aattcttctgtagaaaggccaaaaaagactccgaagcaaaaacagacaaaaaagtgcaca
aatcctgcaaaagtagagaaaaatagagccccacaaacttccagctgtcacacagaacag
aggaaccaagtcaaagccatctccaggagggatggacagcacagcactcaggctccagat
gaggaggccttaaaaaaaaatcttcccaaaattccatgcttgtcttctttcaaaacccaa
ctcaccagtccctggagcttctcagatttcgttgaagattatgattatttcattaaagaa
gggtcagagagagaggtggagattttaagaagttactcaggcccaggagagcagcgtggg
ctgcccagaaatggggatgtggagtgggaagagatggaatatcacccagaggcagcagca
gacgaggctgagtctgctgacagcgatggctcagagagctccaggggttcctttaacagc
agggccaacaactcctgctctgaggccttttcagacacacaggagccaagccctgtgccc
ccagcacgccagggccccccaggtttctgtcccacaccagagaagcctcaggagccttcc
cacagcccaaggcaaaaggaagtgaaaaagaaggtcccaaaacagagtgctaaagccaag
agaagccacaagcatcagtcgtgcagtcctgccatgagcagggctgaggaggagcagagc
tgcagctcctgggaggacgctgctcaccagggctggagctctgagcactactggaggtgc
tactacgaggcctggcacagctactactctgcagtgtcccagtacagcaggggctactgg
cacctgggctgcatcagggcctaccacaccaactcagtctatctccaggagctgctgaga
gacgggcactga
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