Agelaius tricolor (tricolored blackbird): 139601794
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Entry
139601794 CDS
T10815
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03040
Spliceosome
Brite
Enzymes [BR:
atrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139601794 (DDX42)
Spliceosome [BR:
atrc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
139601794 (DDX42)
Complex B
139601794 (DDX42)
Complex C
U2 SnRNP specific factors
139601794 (DDX42)
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GFIT
Other DBs
NCBI-GeneID:
139601794
NCBI-ProteinID:
XP_071307183
LinkDB
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Position
Unknown
AA seq
1083 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAANPESPIAATAAAKGVPGFSSTGSLSSVPP
FPSAGAQGFNSTNTSASSREGGGGIVRERYNDSRNSRHGEAPRRTEGGAGGRGEGGAGGR
GEGAGGRGEGGAGGRGDGGGGRGEGAGGRFNEGQRFNEGQRFNEGQRFNEGQRFNDGQRF
TEGQRFSDGQRFNDGQRFTEGQRFNDGQRFNDGQRFNDGQRFNEGQRFSDGQRFNEGQRF
NDGQRFNEGQRFNDGQRFTEGQRYDGQRYTEGQRYGDSQRHGEGGGRHGDPSRHSDGRHG
DVHRHGEGRHFSDSPGGNRNSGDSRNSESRNGENRKEANSRDNKTDGFAVPEPPKRKKSR
WDS
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtaccaagagaggctttgggtttggtggctttgcc
atcacacctggcaagaaggaggagcccaagctgtctcagcagtcccacagtgcttttggc
accgccggctcctcggcagcatttgcgaaatcggggcctcctcagctgccttccttctac
aaaattgggtcaaagagagccaattttgatgaggagaatgcgtactttgaggatgaagag
gaggattccagcaatgtggaattgccctacattcctgcagagaattcccccactcggcag
cagttccattccaaatcagcagactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaggaa
aaaaagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcgtat
tttcgctacatggcagagaaccccactgctggtgtggtgcaggaggaggaggaggataac
ctggagtatgacagcgatgggaatccgattgcaccctccaaaaaaatcattgatcccctt
ccacctattgaccattcagagattgaatacccaccatttgagaaaaatttctacgatgag
catgaggagatcaccagcctgaccccgcagcaggtggtggagctacggcacaagctcaat
ctccgggtctccggggctgctcctccaaggcctggcagtagttttgctcattttgggttt
gatgagcaacttatgcatcagattaggaaatctgagtatacccaacccactccaatacag
tgtcagggtgttccagtggcactaagtggcagagacatgattgggatagccaagactgga
agtgggaaaacagctgctttcatctggccaatgctgatccacatcatggatcagaaggag
ctggaaccaggggatggtcccattgcagtgattgtctgcccaaccagggagctctgccag
cagatccactcggagtgcaagcgctttggcaaggcctacaacctgcgctcggtggccgtg
tacggaggagggagcatgtgggagcaagccaaggccctgcaggagggggcagagattgtg
gtctgcacaccaggtcgtttgattgatcatgtgaaaaagaaagctacaaacctgcagaga
gtcacttaccttgtgtttgatgaagctgacagaatgtttgatatggggtttgaataccag
gtcagatcaatcgcgagccacgtacgtcctgacagacagaccctcttgttcagtgccacg
ttccgtaagaagattgagaaattggctcgggatatcctgatcgacccaattcgggttgtg
caaggagacattggagaggcaaatgaagatgtcactcagattgtggagattttcccctct
gggcccagcaagtggaactggctgacgcggcgcctggtggagttcacgtcctcggggagc
gtcctcctcttcgtcaccaagaaagccaatgcagaggagctggccaataacctcaagcag
gaggatcataacctggggctgctgcatggggacatggaccagagcgagaggaataaagtc
atttcggaatttaagaaaaaggggatccccatcctggtagctactgatgtggcagctcga
ggcttggacatcccttccatcaagactgtcatcaactacgacgtggctcgggacatcgac
acccacacgcaccggatcggccgcaccggccgcgcgggggagaagggggtggcctacacc
ctgctgacccccaaggacagcaacttcgctggtgacctggtcaggaacctggagggtgcc
aaccagcacgtctccaaagagctgctggacttggcaatgcagaacccgtggttccggaaa
tcccggtttaaaggagggaagggcaagaagctgaatattggtggtggtggcctggggtac
cgtgagcgccctgggctgggctcagaaaatactgaccgtggaaacaacaacagtgtgatg
agcaactatgaggcctacaagccatccacaggggccatgggggacaggctgacagcaatg
aaagcagctttccagtcccagtacaagagtcactttgttgctgcaagtttaaataaccaa
aagactgggagctctgccgctggcgccagcggctggaccagcgccgggagcctgaactcc
gtcccgacgagttcagcgcagcagaacgccgccaatcccgagagccccatcgcagccacg
gcagcagccaagggagtgccgggcttcagcagcacgggcagcctgagcagcgtgcccccc
ttcccgagcgccggggcacagggcttcaacagcacaaacaccagcgccagcagccgggag
ggcggcggcggcatcgtcagagaacgctacaacgacagccggaacagtcggcacggcgag
gccccgcggcgcacagagggcggcgctggtggccggggggagggcggcgctggtggccga
ggggagggcgctggtggccggggggagggcggcgctggtggccgaggggatggtggtggt
ggccgaggggagggcgctggtggccgctttaacgagggccagcgctttaatgagggccag
cgctttaatgagggccagcgctttaatgagggccagcgctttaacgatggtcagcgtttc
accgaaggccaacgcttcagtgatggccagcgcttcaacgatggccagcgcttcaccgaa
ggccagcgtttcaatgatggccaacgtttcaatgatggccaacgcttcaacgacggtcag
cgctttaacgagggccagcgcttcagtgatggtcagcgctttaatgagggccagcgcttc
aacgatggccaacgctttaacgagggccagcgcttcaacgatggtcagcgtttcactgag
ggccagcgctacgatggccagcgttacaccgagggccagcgctacggcgatagccagcgc
cacggcgaaggcggcggccggcacggcgacccctcccggcacagcgacggccgccacggc
gatgtccatcgccacggcgagggccggcacttcagcgactcgccgggcggcaaccgcaac
agcggtgacagcaggaacagcgagagcaggaacggagagaacaggaaggaggccaacagc
cgagacaacaagacagatggctttgctgtcccagagcccccaaaacggaagaagagccgg
tgggacagttaa
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integrated database retrieval system
