Agelaius tricolor (tricolored blackbird): 139601864
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Entry
139601864 CDS
T10815
Symbol
DDX5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139601864 (DDX5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atrc03041
]
139601864 (DDX5)
03009 Ribosome biogenesis [BR:
atrc03009
]
139601864 (DDX5)
Enzymes [BR:
atrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139601864 (DDX5)
Spliceosome [BR:
atrc03041
]
Complex A
U1 snRNP components
U1 related factors
139601864 (DDX5)
Complex B
139601864 (DDX5)
Ribosome biogenesis [BR:
atrc03009
]
Eukaryotic type
Pre-60S particles
Helicases
139601864 (DDX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
139601864
NCBI-ProteinID:
XP_071307311
LinkDB
All DBs
Position
Unknown
AA seq
604 aa
AA seq
DB search
MPGYSSDRDRGFGAPRFGGSRGGPLSGKKFGNPGEKLTKKKWNLDELPKFEKNFYQEHPD
VVRRTAQEVEQYRASKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQG
WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQ
QVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTY
LVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGA
LELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRD
GWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSED
YIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLLQLVEDRGSGRSR
GDRRDRYSAGKRGGFSSFRERENFERTYGALGKRDFGAKTQNGAYSAQSFSNGTPFGNGF
AAAGMQAGFRAGGNPTGAYQNGYEQQYGSNIANMHNGMNQQQYAYPATGAAPMIGYPMPT
SYSQ
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggtattccagcgacagggatagagggtttggagcccctcgttttggaggaagt
agaggtggacctctctctgggaagaaatttggaaaccctggggagaaacttacaaaaaag
aaatggaacttggatgagctgcccaaatttgagaagaacttctaccaagaacatccggat
gtagtgagacgtactgcgcaagaagttgaacagtacagggcgagcaaagaggtcacagtt
aggggccataactgtccaaaaccaattatcaacttttatgaagcaaacttccctgcaaat
gttatggaagtaattcagaggcagaacttcactgaaccaactgctattcaagcacaaggt
tggcctgttgcattgagtggattggatatggttggagtggcacagactggatcagggaaa
acactctcatacttactgcctgccattgtgcatataaatcatcagccattcctggagcga
ggagatggacctatttgtcttgtgttggcaccaacccgtgaactggcccaacaagtgcag
caggtggctgcagagtacagcagagcgtgtcgtttgaagtccacgtgtatttatggaggt
gctccaaagggaccacaaatccgtgacctggaaagaggtgtggaaatctgcattgcaaca
cctggaagacttatagacttcctagaagctggaaagaccaatctcaggaggtgtacctac
cttgtccttgatgaagctgacaggatgcttgacatgggatttgaacctcagatcagaaaa
attgtggatcagataagacctgacaggcagactctgatgtggagtgccacatggcctaag
gaagtgaggcagctggctgaagatttcttgaaagaatatgtgcacattaacattggtgca
ctggagctgagtgcaaaccacaacattcttcagattgtggatgtgtgtcatgatgtagag
aaagatgacaagcttattcgtttgatggaagaaatcatgagcgagaaggaaaacaaaaca
attgtttttgtggaaaccaaaaggcgttgtgatgatcttaccagaaaaatgaggagagat
gggtggccagcaatgggtattcacggtgataaaagccagcaggagcgggactgggttcta
aatgaattcaaacatggaaaagcaccaatcctgattgctacagatgttgcatccagaggt
ctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaactcctcagaggac
tatatccaccgaattggacgaactgcccgcagtaccaaaacaggcacagcatacacattc
tttactcctaacaatattaagcaagtaaatgacctcatctctgtgcttcgggaggctaat
caagccatcaaccccaaattgctccagctggttgaagacagaggttcaggtcgttcccga
ggtgaccgacgtgacagatactctgcgggcaaaaggggtggatttagtagttttagagag
agggagaactttgagagaacctatggtgcactaggcaagagagacttcggagcaaaaacc
caaaacggggcttacagcgcccagagtttcagcaatggaactccctttgggaatggcttt
gcagctgcaggcatgcaggccggcttcagggccggcggtaaccccacgggagcgtaccag
aacggctacgagcagcagtacggcagtaacattgccaacatgcacaatggcatgaaccag
cagcagtacgcctaccctgccactggtgctgctcctatgataggttaccccatgcccaca
agttattctcaataa
DBGET
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