Agelaius tricolor (tricolored blackbird): 139601965
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Entry
139601965 CDS
T10815
Symbol
ALYREF
Name
(RefSeq) THO complex subunit 4
KO
K12881
THO complex subunit 4
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03013
Nucleocytoplasmic transport
atrc03015
mRNA surveillance pathway
atrc03040
Spliceosome
atrc05168
Herpes simplex virus 1 infection
Brite
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
139601965 (ALYREF)
TREX complex
139601965 (ALYREF)
Spliceosome [BR:
atrc03041
]
Complex C
Other components
EJC/TREX
139601965 (ALYREF)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
139601965 (ALYREF)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
139601965
NCBI-ProteinID:
XP_071307478
LinkDB
All DBs
Position
Unknown
AA seq
254 aa
AA seq
DB search
MADKMDMSLDDIIKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRP
VMARGGGRNRPAPYSRPKQLPEKWQHDLFDSGFGAGAGVETGGKLLVSNLDFGVSDADIQ
ELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTS
QIDTQRRPAQSVNRGGMTRNRGVLGGFGGGGNRRGTRGGNRGRGRGAGRTSKQQLSAEEL
DAQLDAYNARMDTS
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaagatggacatgtccctggacgacatcattaagctcaaccggagccagcgc
ggggccagccggggcggccggggcggccggggccggggcggcaccgcacgcgggggcggg
cccggccggggcggcgttggcggcgggcgcgcgggcggcggccccgtgcggaaccggccg
gtgatggcccgaggcggcggcaggaaccggcccgcgccctacagccggccgaagcagctc
ccggagaagtggcagcacgacctgttcgacagcggcttcggggcgggggccggcgtggag
accggcggaaagctgctcgtctccaacctggacttcggcgtctcggatgcggacatccag
gagctctttgcagagtttgggaccttgaagaaggcagctgtgcactatgacaggtctggc
cgcagcctaggaacggcagacgtgcatttcgagaggaaggctgatgcactgaaggccatg
aagcagtacaacggggtgcccttggatgggcgccccatgaacatccagctggtcacgtca
cagatcgacacgcagcggagaccagcacagagtgtaaacagaggtggcatgaccaggaac
cgcggggttttggggggatttggaggtggaggcaacaggcgagggactcgtggcgggaac
agagggagaggcagaggagctggaagaacttccaaacagcagctctctgcagaagaacta
gatgcacagctggatgcttacaatgccaggatggacaccagctaa
DBGET
integrated database retrieval system
