Agelaius tricolor (tricolored blackbird): 139602739
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Entry
139602739 CDS
T10815
Symbol
TNRC6C
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
atrc Agelaius tricolor (tricolored blackbird)
Brite
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139602739 (TNRC6C)
Chromosome and associated proteins [BR:
atrc03036
]
Eukaryotic type
Gene silencing
piRNA pathway
139602739 (TNRC6C)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
RRM_1
UBA
RRM_occluded
DUF4718
THOC7
Motif
Other DBs
NCBI-GeneID:
139602739
NCBI-ProteinID:
XP_071308945
LinkDB
All DBs
Position
Unknown
AA seq
1998 aa
AA seq
DB search
MEEKKKKKQEEKKKKEGAQKKAAEQKTKVPEPIKTSLSQPQPAGTGTSTSTSTLTNSSNG
KRASANGQQPAASRYLPREVPPRFRQQEQKQLLKRGQPLPAGALGAPGPAPGTAAAAGAS
PPPPPPPPPPPPPPPPPPPPPQQGAAAQQQQQQHPGKAQPDLSHSGLGDHYENSHWGQQP
AFRSEGNCSWDKVIIDRTDKEAWPSITGAETESASECTTDTDSASNCGSENSSMATGSAQ
GNFTGHTKKTNGNNGANGALVQSTSNQSALGAGGANGNGSSARVWGVAAGSSSGLAHCSA
SGGDGKMDNMMGDGRSQNCWGASNSNAGINLNLNPNANPAAWPVLGHEGTVGAGNPSSIC
SPVSAIGQNMGNQNGNPTGTLGAWGNLLPQESTEPQTSTSQNVSFSVQPQNLNTDGPNNT
NPMNSSPNPINAMQTNGLPNWGMAVGMGAIIPPHLQGLPGANGTAVSQVSGGSGEGMGSS
VWGMSPGNPAAGNSNSGFSQGNGDTVNSALSAKQNGSSSAVQKEGNGANAWDSGPPSGPG
VLAWGRGGGGVGSVHSGAWGHPNRSASNGVNGEWGKPPNQHSNSDINGKGSTGWDSSSVT
SPNPAMQQGNEQMNSWAKAAASGTTASEGSNDSGGSQNEGSTGREGAGEGRRRDKGMIDQ
GQVQLPRNDLDPRVLSNTGWGQTPVKQNTAWEFEESPRSERKNDNGTEAWGCAATQSSNS
GGKNDGSIMNSTNTSSVSGWVNSPPAAVPTNTGWGDSNNKAPNGPGGWGESASSTTVNNA
AAAKSGHTWSGTANQEDKSPTWGEPQKPKSQNWGDGQKSNPSWTSGGGDWTDSSSVPGHL
GDGKKNGSGWDSDNRSGSGWNDSTKSGTSGWGNGTNSKANTGTSWGESLKPGPQQNWANK
PQDNNVSNWGGAASVKQTGSGWVGGPVPAKQKENCEATGWEEPSPPSIRRKMEIDDGTSA
WGDPNYNNNKTVNMWDRNNPIIQSSTTTNTTTTSTIINTNMVEPQPSHQSSAQPNRSPLL
GPAGWGEMPAVHTKSEASWGEPSSPSAAVDNGTSAWGKPPSSGTGWGENPAEPAGTYGRT
NAPAAAPALCKPASKSMQEGWGSGGDDVNLSTSQWEDEEGDMWNNTASQESSSSCNSWGN
APKKGLQKPKTNPRLSLGTFWRTEKKRLLKDIVIEKLHKDLLKGMKTSSKQDEAWIMNRL
IKQLTDMGFPREPAEEALKSNSMNLDQAMSKYLCALLEKKVEMDKRGMGVTDYNGMVTKP
LGCRPPPISKESSMDRPTFLDKLTLSFSNQDGGLVEEPTTSPFLPSPSLKLPLSNSALPN
QTLGGIASGLGMQNLNSSRQIPSGNLGMFGNSGAAQARTMQQPQQPPVQPLNSSQPSLRA
QVPQFLSPQVQAQLLQFAAKNIGLSPAQLTSPINNPQHMTMLNQLYQLQLAYQRLQIQQQ
MLQAQRNVSGPMRQQEQQVARTINNMQQQIQQHQRQLAQALLMKQQPPPPHLSLHPSAGK
SAMDSFSPHPQAPGLPDLQTKEQQSSPNTFAPYPLAGLNPNMNVNNMDITGGLSVKDTSQ
SQSRLPQWTHPNSMDNLSSAASSLDQNSSKHGAIPGGLSIGPPGKSSLDDSYGRYDLMQN
SESPASPPVAVPHSWSRAKSDSDKISNGSSINWPPEFHPGVPWKGLQNIDPENDPDVTPG
SVPTGPTINTTIQDVNRYLLKSGGSSPTSSQNATLPSSSAWPLSASGYSSSFSSIASAPS
IAGKLSDIKSTWSSGPISHTQASLSHELWKVPRNTTAPTRPPPGLTNTKPSSTWGASPLG
WTSSSYSSGSAWSTDSSGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNA
VVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQALPPTSSWQSNTGST
PGRLGSSGSSHGLVRPDAGHWNPPCLGGKGSSDLLWGGVPQYSSSLWGPPSADDGRVIGS
PTPLNTLLPGDLLSGESI
NT seq
5997 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaagcaggaagaaaagaaaaagaaggaaggtgctcagaaa
aaggctgctgaacaaaaaaccaaagtgccagaacctattaagaccagtttaagccagccc
caacctgccggtaccggtaccagtacttccaccagcactctcaccaacagcagcaatggc
aagcgcgcgtctgccaacgggcagcagcctgcggcgtcccgctacctgccccgagaggtg
cctccccgcttccgccagcaggaacagaagcagctcctaaagcgggggcagccactgccc
gctggggctctcggtgcccccggcccggcgccgggcacggcagcagcagcgggagccagc
cctcctcctcctcctccacctcctcctcctcctcctcctcctcctcctcctcctcctcct
cctcagcagggagcagcggcacagcagcagcagcagcagcatcccggcaaggcgcagcca
gatctcagccacagtggattgggagaccattatgagaattcccactggggacagcagccc
gctttcaggagtgaaggcaactgcagctgggataaagtgataatagacaggactgacaag
gaagcgtggccttccattaccggagctgagactgagtctgcctcagaatgtactacagac
actgactctgcctccaactgtggctcagagaacagtagcatggctacagggagtgcccaa
ggcaacttcactggacatacaaagaaaactaatggcaataatggcgccaacggagcactc
gtccaaagcacttctaaccagagtgcccttggagctggtggagccaacggcaacggcagc
tcggccagggtgtggggggtggctgcgggctccagctctggcctagctcactgctctgcc
agtggtggggatggaaagatggacaacatgatgggagacggtagaagtcagaactgctgg
ggtgcttccaactcgaatgctggcattaatcttaaccttaaccctaatgccaatccagct
gcctggcctgtacttggacatgaaggaactgtgggagcaggcaacccttccagtatttgc
agtccagtcagtgccataggtcagaacatgggcaaccagaatgggaacccaacaggcacc
ttaggtgcttggggaaacttgctgccgcaagagagcacagaaccacaaacgtccacttct
cagaatgtgtctttcagcgtacaacctcagaaccttaacactgatggaccaaataacact
aaccccatgaactcttcaccaaaccctatcaatgcaatgcagacaaacggactgccgaac
tgggggatggccgtgggcatgggggccatcatcccgccccacctgcaaggccttcctggt
gctaacgggacagcggtttctcaagtcagcgggggcagtggtgaaggaatgggcagttca
gtatgggggatgtccccaggtaatcctgccgcaggaaacagcaattctgggttcagtcag
gggaatggagacactgtgaactcagcattaagtgctaaacaaaacggatccagcagcgct
gtgcagaaggaaggaaacggagcgaacgcgtgggactcggggcctccctctggccccggg
gtcctggcttggggcaggggcggtggcggggttggcagtgtgcattctggagcctggggc
caccccaaccgcagcgccagcaacggcgtcaacggcgagtggggcaagcccccaaaccag
cattccaatagcgacatcaatgggaaaggatcaacagggtgggatagctcgagtgttacc
agtcccaatcctgccatgcagcagggcaatgaacaaatgaactcttgggccaaagctgca
gcatctggcaccacagctagtgaaggaagcaacgacagcggtgggagtcaaaatgaaggc
agtactgggagggagggggctggagagggcaggaggagagacaaagggatgatagaccaa
gggcaagttcagttgccaagaaatgaccttgaccccagggtcctgtccaatacggggtgg
ggacagacccctgtgaagcaaaacactgcctgggaatttgaagagtccccaaggtctgaa
cggaagaatgacaatggaactgaggcctggggttgtgcagctactcaatcttcaaactca
ggggggaagaacgatgggtccatcatgaacagtacaaatacctcttcagtatctgggtgg
gtcaactctccaccggcagctgttccaacaaatacaggttggggagacagtaacaacaaa
gcaccaaatggcccaggggggtggggagagtcagcaagctctactactgttaataatgct
gctgctgccaaaagcggccacacttggagtgggaccgcaaatcaggaggacaaatcacct
acctggggtgaacctcaaaaacccaaatctcaaaactggggagatggacagaaatcaaat
ccaagctggacttcaggaggtggagactggacagattcatcatctgttcctggacacttg
ggtgatgggaagaagaatggatctggatgggattctgacaatagatcggggtctggctgg
aatgattccacaaagtctgggaccagtgggtgggggaatggcacaaacagcaaggctaat
acaggtacaagttggggggaatctttaaagccaggcccccaacaaaattgggctaataaa
ccccaggacaacaatgtgagtaactggggaggagctgcttctgtaaaacagacggggtca
gggtgggttggtgggccagtgccagccaaacaaaaagagaactgtgaggcaactggctgg
gaagagccatctccaccgtccattcgccgcaagatggaaatcgatgatggtacctcagct
tggggagacccaaattacaacaacaacaagactgtaaacatgtgggatagaaataatcct
ataattcagagcagtaccacaaccaacaccaccaccactagcaccattatcaacaccaac
atggttgaacctcagccatcgcaccagtcaagtgcccagccgaaccggtccccgctgctt
ggcccagcaggctggggagagatgcctgctgtccacaccaagagtgaagcttcctgggga
gagccctcctccccttctgctgcagttgataatggcacttcagcctgggggaagcccccc
agcagtgggactgggtggggagagaatcctgccgagcctgcagggacctatggaagaaca
aatgctccagctgctgccccagcactgtgcaaaccagcttcaaaatctatgcaagaaggc
tgggggagtggtggggatgatgtgaatctcagtactagtcagtgggaagatgaagaagga
gatatgtggaataatactgcttcacaagagagcagctcctcctgtaattcctgggggaat
gccccgaagaaaggacttcaaaagcccaaaacaaatccgcgcttgtcccttggtactttc
tggagaactgaaaagaagagacttcttaaggatattgtgatagaaaagctgcacaaagat
cttttaaagggcatgaagacatctagcaagcaggatgaggcctggatcatgaaccgtctg
ataaaacagctcacagacatgggcttccctagagagccagcggaagaggccttgaagagc
aacagtatgaatcttgatcaggccatgagtaagtatctgtgtgctctgctggaaaagaag
gtggaaatggacaagcgtggaatgggagtgaccgactataatggaatggtcaccaaaccc
cttggctgccgcccaccaccaatctccaaagagtcttccatggaccgccccaccttcctt
gacaagctcaccctttctttctccaatcaggatggcggcctagtggaagagcccactact
tcaccatttttgccttcaccaagcctgaagctccccctttcaaacagtgcactccctaat
cagaccctgggcgggattgcctcagggctgggcatgcaaaacttgaattcttctagacag
ataccgagtggcaatctgggtatgtttggcaatagcggagcagcacaagccaggaccatg
caacagccgcagcaaccgccagtgcaacctcttaattcatcccagcctagtcttcgtgct
caagtgcctcagtttctatcccctcaggttcaagcacagcttttgcagtttgcagcaaaa
aacattggtctcagccctgcacagttaacctcgccaattaataatcctcagcatatgacg
atgttgaaccagctctatcagctgcagctggcataccaacgtttacaaatccagcagcag
atgttacaggctcagcgtaacgtttccggacccatgagacaacaggagcagcaagttgca
cgtacaatcaataacatgcagcagcagatccagcagcaccagcgccagctggcccaggcc
ctgcttatgaagcagcagcctccccctccacatctatctttgcacccctctgcaggcaaa
tcagccatggatagcttttcaccccatcctcaggctcccggccttcctgacctgcagacc
aaagagcaacagtcttcaccgaacacctttgctccttaccctcttgctggactgaacccg
aacatgaatgtaaataacatggacattactggtggtttgtcagtgaaggacacttctcag
tcccagtctcgccttcctcagtggacacaccccaactcaatggataatctgtctagtgct
gcttcttctcttgaccagaactccagcaagcacggtgctatccctggaggtttgagtatt
ggtcctccgggcaagtcctccctcgatgactcctacggccgctatgatctgatgcagaac
agtgagtctcctgccagcccacctgtagctgttcctcacagctggtcacgtgccaaatcc
gatagtgataagatttccaatggctccagcataaactggccaccagagtttcacccagga
gtgccatggaaaggactgcagaatattgatcctgaaaatgaccctgatgttactcctggc
agtgttccaactgggcctaccataaacaccacgatacaggatgtgaatcgctatctgctc
aagagtggagggtcatccccaacatcatctcagaatgccacgctgccttcatcgagtgcc
tggccgcttagtgcctccggctacagtagctctttcagcagcattgcatctgcacctagc
attgcaggtaaactgtcagacatcaagtccacgtggtcctctggcccaatctctcacacc
caagcctctctgtcccacgaactctggaaggtacccagaaacactacagctccaaccaga
cctcctccaggcttaaccaacaccaagccatcctccacgtggggtgccagtcccctgggc
tggaccagctcttcttactcctctggttctgcatggagtactgacagctcagggagaaca
agcagctggctggttcttcggaacctcaccccccagatcgatggctccacgctgcgcacg
ctgtgtctgcagcacggccccctcatcacattccacttgaacctgacccaaggcaatgct
gtggtccgatacagttccaaggaggaagcagccaaggcccagaagtctctgcacatgtgt
gtcctgggcaacaccaccatcctggcggagtttgctggtgaggaggaggtgaaccggttc
ctggcgcaggggcaggcgctgccgcccacctccagctggcagtccaacactggatccacg
cccggccgcctgggctcctcgggcagctcccacgggctggtgcgccccgacgccggccac
tggaaccccccgtgcctggggggcaagggcagcagcgacctgctctgggggggggtgccc
cagtactccagcagcctttggggaccccccagcgccgacgacggaagggtcatcgggagc
cccacgcccctcaacaccctcctgccgggggatctgctcagcggggaatccatctag
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integrated database retrieval system
