Agelaius tricolor (tricolored blackbird): 139602808
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Entry
139602808 CDS
T10815
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139602808 (SNRNP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atrc03041
]
139602808 (SNRNP40)
Spliceosome [BR:
atrc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139602808 (SNRNP40)
Complex C
U5 SnRNP specific factors
139602808 (SNRNP40)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_WDR75_2nd
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
Cytochrom_D1
WDR54
WD_LRWD1
Beta-prop_Nup120_160
PROPPIN
Motif
Other DBs
NCBI-GeneID:
139602808
NCBI-ProteinID:
XP_071309067
LinkDB
All DBs
Position
Unknown
AA seq
388 aa
AA seq
DB search
MIEQQKRKVPGPGPGPGPAPGAPPGPVAPGAAPGAAPAPGPDLPLVPVPAKRPRHDLPGA
PGTGGAGGQPAAGALLQAGPPRCSSLQAPIMLLSGHEGEVYCCKFHPNGNTLASAGFDRL
ILLWNVYGDCDNFATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKG
HTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQII
SGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRIWDVRPFAP
KERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAGGSADRFVYVWDTTSRRILYKLPGHAGS
VNELAFHPEEPIILSASSDKRLYMGEIQ
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagcagcagaagcgaaaggtcccgggccccgggcctggtcccggcccggcgccc
ggcgcccccccgggccccgtcgcccccggagccgctcccggagccgcccctgcgcccggc
cccgacctcccgctcgtccccgtgcccgccaagcggccccgccatgacctgccgggggcg
ccgggcacgggcggcgcaggggggcagccggcggccggggctctgctgcaggcgggccct
ccccgctgctcctcgctgcaggcccccatcatgctgctgtcaggacacgagggggaggtt
tactgctgcaagttccaccccaacggcaacaccctggcctcagctggcttcgacaggctc
atcttgctctggaacgtctacggggactgtgacaactttgccaccctgaagggacacagc
ggggctgtcatggagctgcactacaacacggatggcagcatgctcttctcagcatccacc
gacaaaaccgtggctgtgtgggacagcgagacaggggagagggtcaagaggctcaagggc
cacacgtcctttgtcaactcctgctaccctgcccggaggggaccccagctcgtctgcacc
ggcagcgacgatggcactgtcaagctgtgggatatcaggaaaaaagctgctgtccagaca
ttccagaacacctaccaggtcctggctgtcaccttcaatgacaccagtgaccagatcatc
tctggaggcattgacaatgacatcaaggtgtgggacctgcggcagaacaagctcacctac
accatgcggggccacgccgactcggtgacggggctgagcctcagctctgagggctcctac
ctgctctccaacgccatggacaacacagtccggatctgggacgtgaggccctttgccccc
aaggagagatgtgtgaagattttccagggaaatgtccataattttgagaagaaccttctg
aggtgctcctggtccccagatggcagcaaaattgcagggggctctgctgataggtttgtg
tacgtgtgggacaccacctccaggaggatcctgtacaagctgcctggccatgctggctct
gtcaatgagctggccttccaccccgaggaacccatcattctctctgcatccagtgacaaa
aggctctacatgggggagatccagtga
DBGET
integrated database retrieval system
