Agelaius tricolor (tricolored blackbird): 139603014
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Entry
139603014 CDS
T10815
Symbol
ARID1A
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03082
ATP-dependent chromatin remodeling
Brite
Transcription factors [BR:
atrc03000
]
Eukaryotic type
Helix-turn-helix
ARID
139603014 (ARID1A)
Transcription machinery [BR:
atrc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
139603014 (ARID1A)
Chromosome and associated proteins [BR:
atrc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
139603014 (ARID1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
139603014
NCBI-ProteinID:
XP_071309492
LinkDB
All DBs
Position
Unknown
AA seq
2258 aa
AA seq
DB search
MAAQVAPAAASSLGAPAPSELKKAEAQQRDCPPEEAGGEAAAAERGEKQAESEGPSGKEL
QDGAESNGGGAGAESDLKSSNGNPGPRPAAAATLNNNLPEPPGGGGGGGSDGVGAPQPPP
QQQPPPSHPAALPPPAYGFGQPYGRGAAAAFHQHGGQQSPGMAALQSGGLEQNYPGPAGA
PAGPPPPQNSHGAGAEHGFPNHQYNSYYAAGRSAGSYPPPPQAYALSSPRGSAPPAAKSP
AAAAAAAAFQQQQQRFGVMGPSAAGGAGGGGTTPQPTATPTLNQLLTSPSSARAYQGYPG
GDYSAGPQDGAAAAKGAADMVSQYGGGSGQGWAAAGGAPPRSHHAPMSPGSSGGGGQSLG
RSQQPASPMDQMGKMRPQPYGGNNPYTQQAGPQAGPQQGHGYPGQPYGPQGPQRYPMAMQ
SRTQSAMGSISYAQQMPPYGQQGPSAYGQQSQSPYYNQQSPHPQQQQQQQAPYSQQQQQQ
PAHSQPSYQQQQQQPQAQPPAPAQPAYSQPPAQPPHQQPPSPYPQQAAPQHPQGQPPYSQ
QQSQSPYQQQQAQQPAAPAALAQPSSSYPPAQPPQQPSAYGQQRFPPPQELSQDSFGSQA
SSAPSMASSKGQEEMNLNLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQ
SNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQS
DTILHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQSSGAQMHAGMGPYQQNSM
GSYGPQGGQYGPQGGYPRQPNYNAMSNANYPSPGMGGSMNPMGAGGQMHGQSGVPPYSGL
PPGRMGHGAMGSRPYGPNMASMPPQVGSGMCPPPAGMNRKAQEAAAAAMHAAANSIQNRP
PGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPPYPMGGNMANNSAGMAASPEMMGLGD
VKLTPATKMNNKADGTPKAESKSKKSSSSTTTNEKITKLYELGGEPERKLWVDRYLAFTE
EKAMGMTNLPAVGRKPLDLYRLYISVKEIGGLTQVNKNKKWRELATNLNVGTSSSAASSL
KKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQTKIQPPSPAGSGSMQGPQTPQSTSS
SMAEGGDLKPPTPASTPHSQMPPLPGIRSNSVGLQDAFADGSDPTFQKRNSMTPNPGYQP
SMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNSGMGDPYNRAAGPGMGNMAM
GQRQHYSYGAPYDRVRTEPGLGPEGSLGSGTPQPSILPAAPDSGMYSPSRYPQQQQQQQR
HDSYGNQFSTQGTSSGSPFPSQQTTMYQQQQQNYKRPMDGSYGLPAKRHEGELYNVPYSS
GQGQPQQQLPPAQPQQPSQQPPAQPSPQQDLYNQYGSTYPAERRPGQSQFPFQFGRDRVS
AAPGSGAQQNIPPQMMGGPIQPAPEGPQQGALWQGRNELGYGSYPNRQSSGAAPQGPAYH
GVARTDEILHSDQRVNHEGPWPSHGNRQPPYGPSAPVPPMTRPPQSNYQTPPSMQNHIPQ
VSSPAPLPRPLENRTSPSKSPFLHSGMKMQKAGPPVPASHITPAAVQPPMIRRDITFPPG
SVEATQPVLKQRRRLTAKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIMTF
NLSQLPGLLELLVEYFRRCLIEIFGILKEYEVGDPGQRTLLDPERFCKSSASSPEEGEED
DEPRSLNCEEEEEDEEEEEAAFSSKDKVPLESSEEKLVSKFDKLPVKVVQKNDPFVVDYS
DKLGRVQEFDSGLLHWRIGGGDTTEHIQTHFESKTELPLPHKRASCSSALRKRSAAESNP
SPREGEAPAPDSSSEKRITATMDDMLSARPGSLAGEEEEGKASETAKESSKFPFVISPAQ
SHRNIKILEDEPHSKDETPLCTLLDWQDSLAKRCICVSNIIRSLSFVPGNDFEMSKHPGL
LLILGKLILLHHKHPERKQAPLTYEKEEEQDQGVSCNKVEWWWDCLEMLRENTLVTLANI
SGQLDLSPYPESICLPILDGLLHWAVCPSAEAQDPFPTLGPNAVLSPQRLVLETLSKLSI
QDNNVDLILATPPFSRLEKLYSTMVRFLSDRKNPVCREMAVVLLANLAQGDSLAARAIAV
QKGSIGNLLGFLEDSLAATQFQQSQAGLMHMQSPPFEATSVDMMRRAARALLALAKVDEN
HSEFTLYESRLLDISVSPLMNSLVSQVICDVLFLIGQS
NT seq
6777 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcaggtcgcccccgccgccgccagcagcctgggcgccccggctccatccgag
ctgaagaaagcggaggcgcagcagcgggattgtcccccggaggaggcggggggtgaggcg
gcggcggcggagcgcggcgagaagcaggcggagagcgagggcccgtcggggaaggagctg
caggacggggccgagagcaacggagggggcgcaggggccgagtccgacctgaagagctcg
aacgggaacccgggccccaggcccgccgccgccgccaccctgaacaataacctcccggag
ccgcccggtggcggcggcggcggcggcagcgacggggtgggggcgccgcagccgccgccg
cagcagcagccgcccccttcccacccggccgccttgcccccgccagcctacggcttcggg
cagccctacggccggggcgccgccgctgccttccaccaacatggcggacaacaaagccct
ggcatggcagcgctgcagagcgggggcctggagcagaactacccggggccggcgggagcc
cccgcggggccgccccctccgcagaactcgcacggcgccggggccgagcacggcttcccc
aaccaccagtacaactcctactacgcggccgggcgcagcgccggctcctacccgcctccc
ccccaggcctacgccctgagctccccccggggctccgcgccgccggccgccaagtccccc
gcggccgccgccgccgccgccgccttccagcagcagcagcagcgcttcggggtcatgggt
ccctcggccgccggcggcgcgggaggagggggcaccaccccgcagcccacggccaccccc
accctcaaccagctcctcacctcccccagctccgcccgcgcctaccaggggtaccccggg
ggcgactatagcgccgggccgcaggacggggcggccgccgccaagggcgccgccgacatg
gtctcgcagtacggcgggggcagcggccagggctgggcagcggccggcggggccccgccg
aggagccaccacgcgcccatgagccccgggagcagcggcggcgggggacagagcctcggc
aggagccagcagccggcgagcccgatggatcagatggggaagatgaggcctcagccctat
ggagggaacaacccctacacgcagcaggcggggccgcaggcggggccgcagcagggccac
ggctaccccgggcagccctacgggccccagggcccccagagataccccatggccatgcag
agcaggacgcagagcgccatgggcagcatctcctatgcacagcagatgcctccgtacggg
cagcagggccccagcgcgtacgggcagcagagccagagcccctactacaaccagcagagc
cctcacccgcagcagcagcagcagcagcaggctccctactcgcagcagcagcagcagcag
cccgctcactcgcagccctcgtaccagcagcagcagcagcagccgcaggcgcagcccccg
gccccggcccagcccgcgtactcgcagccgccggcgcagccgccccatcagcagcccccc
agcccgtacccgcagcaggcggccccgcagcacccccagggccagcccccctactcccag
cagcagtcccagtcgccgtaccagcagcagcaggcgcagcagcccgcggcccccgcggcg
ctggcccagccctcctcgtcgtacccgccggcacagccgccgcagcagccctcggcctac
ggccagcaacgcttccccccgcctcaggagttatctcaagactcgtttgggtcccaggca
tcctctgctccctcaatggcttccagtaaagggcaagaagagatgaacttgaatcttcag
tccagaccttccagcctgccggacctgtctggttccatagatgacctgcccatggggacc
gaaggagccctgagccctggagtaagcacatcagggatttccagcagccaaggagagcag
agtaacccagctcagtctcctttctcgccacatacctctcctcacctgccaggcatcaga
ggaccctctccctccccagttggatctccagccagcgttgctcagtcccgctctggtccc
ctgtcccctgctgcagtcccaggcaatcagatgcctccccgccctcccagtggccagtcg
gacacgatcctgcacccctccatgaaccagtcgagcatcgcgcaggaccgagggtacatg
cagaggaacccccagatgccccagtacagctccccccagcccggctcagccttatccccc
cggcagtcctcgggagcacagatgcacgccggcatggggccctaccagcagaactccatg
gggagctacggaccccagggcggccagtacggacctcaaggagggtaccccaggcagcca
aactacaacgccatgtccaacgccaactaccccagcccgggcatggggggcagcatgaac
cccatgggggcgggcggccagatgcacggccagagcggggtgcccccgtacagcgggctg
cccccgggcaggatgggccacggggccatgggcagccggccctacgggcccaacatggcc
agcatgcccccccaggtgggcagcgggatgtgccccccgcccgccggcatgaaccgcaag
gcgcaggaggcggccgccgccgccatgcacgccgctgccaactccatccagaacaggcct
cctggttatcccaacatgaaccaggggggaatgatgggcactgggcctccttatgggcag
ggaattaacagcatggctggcatgataaacccccagggccccccttaccccatggggggc
aacatggccaacaactctgcagggatggcagcaagccctgaaatgatgggactcggggat
gtcaaattaacacctgcaactaagatgaacaacaaggcagatgggacgcccaaagcagaa
tccaagtcaaagaagtccagttcctctaccacgaccaacgagaagatcaccaagctgtac
gagctgggaggggagcccgagaggaagctgtgggtggatcgttacctggccttcactgag
gagaaggccatgggcatgaccaacctgccagccgtgggcaggaagcccctggacctgtac
aggctctacatctctgtcaaggagatcgggggattgactcaggtcaacaagaacaagaag
tggcgtgagctggccaccaacctgaacgtgggcacgtcgagcagcgcagccagctctctg
aagaagcagtacatccagtgcctgtacgccttcgagtgcaagatcgagcgcggcgaggac
ccccctcccgacatcttcgcggctgctgactccaagaaatcccagaccaagatccagccc
ccctctccagcgggttcaggctccatgcagggccctcagacacctcagtccaccagcagc
tccatggcagaaggaggagacttgaagccaccaactccagcctcgacgcctcacagtcag
atgccccctttgccaggcatcaggagtaactccgtgggccttcaggatgcctttgcagac
ggcagtgatccgacgttccagaaacggaactccatgactccaaatccagggtaccagccc
agcatgaatacctctgacatgatgggtcgcatgtcctacgagccaaataaagacccctac
ggcagtatgaggaaagctccaggaagcgaccccttcatgtcctcagggcagggccccaac
agtggcatgggtgacccttacaaccgcgccgccggccccggcatgggcaacatggccatg
ggccagcggcagcactactcctacggagccccctacgacagagtcaggacggagccgggg
ctggggcccgagggcagcctgggcagtggcaccccccagcccagcatcctgcccgccgca
cccgactcgggcatgtactcgcccagccgctacccccagcagcagcagcagcagcaaaga
catgattcctatggcaatcaattctccactcaaggcacatcctcgggcagccccttcccc
agccagcaaaccaccatgtatcagcagcagcagcagaactacaagcggccgatggacggc
agctacggcctccccgccaagcggcacgagggcgagctctacaacgttccctacagctcg
gggcagggccagccgcagcagcagctgcccccggcgcagccgcagcagcccagccagcag
ccgccggcgcagccctcgccgcagcaggacctgtacaaccagtacggcagcacgtacccg
gccgagcgccgccccggccagagccagttccccttccagttcggcagggaccgcgtctcg
gccgcccccggctccggcgcccagcagaacatccccccccagatgatggggggccccatc
cagccagccccggagggtccccagcaaggggccctgtggcagggcaggaacgagctgggc
tacggcagttaccccaaccggcagagctcgggcgcggcgccgcagggccccgcctaccac
ggggtcgctcgaacggatgaaatcctgcattcagaccagagggtcaaccacgagggacca
tggccttcccacgggaacaggcaacctccctacggcccctccgcccccgtgccccccatg
accaggcccccccagtccaactaccagaccccccccagcatgcagaatcacattcctcag
gtatccagcccagcacctctgcccagacctctggagaaccgcacttctcccagtaaatcc
ccgttcctgcactcggggatgaagatgcagaaggcagggccgcccgtgcctgcctcgcac
atcacaccagcagccgtgcagccccccatgatccgacgggacatcaccttcccacccggc
tccgtggaggccacgcaacccgtgctgaagcagaggaggcggctgacagcaaaagatatc
ggaactcctgaagcctggagagtgatgatgtctctgaagtcggggctgctggctgaaagt
acgtgggccttagataccataaacatcctgctctatgatgacaacagcataatgaccttc
aacctcagccagctgccaggcttgctggaactcttggtggaatatttccggcgctgcctg
atcgagatctttggcatcctgaaggaatacgaggtaggagacccagggcaaagaacacta
ttagatccagaaaggttctgcaaatcttcagcttcctcccctgaagaaggggaggaggac
gacgagccacggagcctgaactgtgaggaggaagaggaggatgaggaagaggaggaggct
gcgttttcgagcaaggacaaagtacctctagagagcagcgaggagaagctagtgagtaaa
ttcgacaagcttccagtgaaggtggtgcagaagaacgacccctttgtggtggattactcg
gacaagctgggccgggtgcaggagttcgacagtgggcttctgcactggcgcatcggcggc
ggggacaccaccgagcacatccagacacacttcgagagcaagaccgagctgcccttgcct
cacaaacgagcttcctgctcctctgccttgaggaaacgttcagcagccgagagcaacccg
agccccagggaaggggaggctcccgcgcccgacagctcctcggagaagaggataactgcc
accatggacgacatgctctcggcacgcccgggctccctggcaggcgaggaggaagagggc
aaagcttcggaaacggccaaggagagcagcaagtttccctttgtcatcagtccagctcag
agccacagaaatataaaaatcctggaggatgaaccccacagtaaggatgagacgccgctc
tgcaccctcctggactggcaggactctctggccaagcgctgcatctgcgtctccaacatc
atcaggagtttatcatttgtgccaggcaatgactttgaaatgtccaaacaccctgggctg
ctgctgattctagggaaactgatcctcctacaccacaagcatccagaacgcaaacaggcc
cccctgacctacgagaaggaggaggagcaggaccaaggggtgagctgcaacaaggtggag
tggtggtgggactgtttggagatgctgcgtgaaaacacactggtcacgttggccaacatt
tctgggcagctggacctctccccttacccggaaagcatctgtttgcctatcctggatgga
ctcctccactgggcagtgtgtccctcagcagaggcccaggatccctttccgacactggga
cccaacgctgtcctctcccctcagagactggttttggaaacactcagcaaactcagcatc
caggacaacaacgtggatctgatcctggccacgccgccgttcagccgcctggagaagctg
tacagcaccatggtgcggttcctcagtgacagaaagaacccggtgtgccgggagatggcc
gtggtgctgctggccaacctggcccagggggacagcctggccgccagagccatcgcggtg
cagaagggcagcattggcaacctgctgggcttcctggaggacagcctggccgccacgcag
ttccagcagagccaggcggggctgatgcacatgcagagcccgcccttcgaggccaccagc
gtggacatgatgcgccgcgccgcccgcgcgctgctggccctggccaaggtggacgagaac
cactcggagttcaccttgtacgagtcgcggctcttggacatctccgtgtcgcctttgatg
aactctttggtttcacaagttatttgtgatgtactgtttttaattggccagtcatga
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integrated database retrieval system
