Agelaius tricolor (tricolored blackbird): 139604212
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Entry
139604212 CDS
T10815
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03008
Ribosome biogenesis in eukaryotes
atrc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
139604212 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
139604212 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atrc03021
]
139604212 (XRN2)
03019 Messenger RNA biogenesis [BR:
atrc03019
]
139604212 (XRN2)
03009 Ribosome biogenesis [BR:
atrc03009
]
139604212 (XRN2)
03016 Transfer RNA biogenesis [BR:
atrc03016
]
139604212 (XRN2)
Transcription machinery [BR:
atrc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139604212 (XRN2)
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
139604212 (XRN2)
Ribosome biogenesis [BR:
atrc03009
]
Eukaryotic type
Pre-60S particles
RNases
139604212 (XRN2)
Transfer RNA biogenesis [BR:
atrc03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
139604212 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
139604212
NCBI-ProteinID:
XP_071311438
LinkDB
All DBs
Position
Unknown
AA seq
949 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKAKECNGVKVPIDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAEEKQKIRQEILAKGGFLPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADTLPVSEQE
FIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKE
KRKRLKRDQPSFIPGGQFSPQALGNRSSPQAICNPRQAAFEMRMHDRQNSTTSASPNTSL
TPDNSPSLGGGIKRKPEDSDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMG
VFPAASGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLCDFIVEQYKTKNTEAVDIPPELCHGIQG
KLTLNDNAVLPDQVVQSPVPMLRDLTQNSAVSISFKDPQFAEDFVFKATVLPGAKKPAPV
LKPGDWEKTNNDGRPWRPQLGFNRDRKPVHLDQSAFRTLGHTMPRDRGMPGMYPNAVPLG
AYGSPYARPLMGSQQQIPKLLSNLRPQESWRGPTPLFQQTPQRTAGAAPLLAWNRVMQSP
NQFQPAQYQGMGPMGYPQRPEDRMDRGRQAYGPGRPYPLPHPAGRYSWN
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggccttcttccgctggctcagccgcaagtacccctccatcatcgtcaac
tgcgtcgaggagaaggccaaagagtgcaatggtgtcaaggtccccattgacacaagcaag
cccaaccccaacgaggtggagttcgacaacctctacctggacatgaacggcatcattcac
ccctgcacacacccagaggacaagccagcgcccaaaaatgaagatgagatgatggtggcg
atttttgagtatatcgacaggattttcaacattgtgagaccaaggagactcctttacatg
gccatagatggagtggccccacgtgccaaaatgaatcaacagcggtccaggagattcaga
gcctcaaaggagggcatggaagctgccgaggagaagcaaaaaatccgacaagaaattctg
gccaaaggtggctttctgcctccagaggaggtgaaggagaggtttgacagcaactgtatc
accccgggaactgagtttatggacaatcttgctaaatgcctccgctattacatcgctgac
cgcttgaacagcgacccgggctggaagaacctgacagttattttgtcagatgccagtgct
cctggtgaaggggaacataaaatcatggattacatcaggagacaaagagctcaacccaac
cacgacccaaacactcaccactgtctgtgtggggctgatgctgatctcatcatgcttggc
ttagctacacacgaaccaaacttcaccatcattagggaagaattcaaaccaaacaaaccc
aagccgtgtgctctctgtaaccagatggggcatgaggttaaggattgccaaggtctgccc
agagagaaacaaggaaagcacgatcagtttgccgacaccctgccggtctcagagcaagag
ttcatcttcatccgcctgtgtgtcctgcgagagtacttggagagagagctcaccatggcc
agcttgcctttcacttttgattttgaaaggagtgttgatgactgggtcttcatgtgcttc
tttgtggggaatgacttcctccctcacctgccatctctggagatcagggagggagcaatc
gatcgcttggtgaacatctataaaaacgtggtgcacaaaaccgggggctacctgactgaa
agtgggtttgtgaacctgcagcgggtccagatgatcatgctggctgttggggaagttgaa
gacagcattttcaaaaagaggaaagatgacgatgataactttaaaagacgacaaaaagaa
aaaaggaagagattgaagagggatcagccttcctttattcctggtggtcagttttcccct
caagccctgggaaatcgatccagccctcaggcaatctgtaaccctcgacaagctgccttt
gagatgaggatgcacgacaggcagaactcgacaacttcagcatctcccaacaccagcctg
actcctgacaacagcccgtccctgggaggaggaatcaagcggaaacctgaggacagtgac
agtgaacctgagccagaggataatatcaggttgtgggagactggctggaagcagcgctac
tataaaaacaaattcgatgtggacgcgtcagatgagaaattccgccgcaaggttgtgcag
tcctacgtggaagggctttgctgggttctcagatattattatcagggctgtgcatcctgg
aactggtattaccctttccactacgctcccttcgcctcggacttcgagggcattgcagac
atgccctcagactttgagaagggctccaaaccgttcaagcctcttgagcagctgatgggg
gtgttcccagccgccagtggaaacttcctgccgccaacgtggaggaaactcatgacagac
ccagaatcaagcatcattgacttctaccctgaagattttgctattgatttgaatgggaag
aagtacgcttggcaaggtgtggcattgttgccctttgtggatgagcgacgcctcagagct
gccctggaggaagtgtaccctgacctcacacctgaagagaccaggaggaacagcctcggc
ggtgatgttctctttgtcgggaagcaccatccactctgtgacttcattgtggagcagtac
aagaccaagaacacagaggcagtggacatcccaccggagctgtgccacggcatccaggga
aagctcaccctgaacgacaacgccgtcctgccggatcaggtggtgcagtctcctgttccc
atgctgcgggatctgacacagaactctgcagtcagcatctcattcaaagatccacaattt
gctgaagactttgttttcaaggccacagtgttacctggggcaaagaaacctgctccagtt
ctgaagccaggagattgggaaaaaaccaacaatgatggcaggccttggagaccacagctt
ggctttaacagggacaggaaaccagtgcatttggaccagtcagcgttcagaaccttgggg
cacacaatgccaagggacaggggcatgccagggatgtaccccaacgctgtgccgctcgga
gcctacggcagcccctacgccaggcccctcatgggcagccagcagcagatccccaaactg
ctgtcaaatcttcggccccaggagtcctggagaggtcccacacccttgttccagcagaca
ccacaaagaaccgccggagccgctcctctcctcgcctggaaccgcgtgatgcagtcccca
aaccagttccagccagcccagtaccagggcatggggcccatgggatacccccagagaccc
gaggaccgcatggacaggggcagacaggcgtacggccccgggaggccctacccgctcccg
catcccgcaggaaggtacagctggaattag
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