Agelaius tricolor (tricolored blackbird): 139605037
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Entry
139605037 CDS
T10815
Symbol
SMARCC1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
139605037 (SMARCC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atrc03021
]
139605037 (SMARCC1)
03036 Chromosome and associated proteins [BR:
atrc03036
]
139605037 (SMARCC1)
Transcription machinery [BR:
atrc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
139605037 (SMARCC1)
Chromosome and associated proteins [BR:
atrc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
139605037 (SMARCC1)
PBAF complex
139605037 (SMARCC1)
GBAF(ncBAF) complex
139605037 (SMARCC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
DUF919
BRCT_2
SpeFL
Motif
Other DBs
NCBI-GeneID:
139605037
NCBI-ProteinID:
XP_071312510
LinkDB
All DBs
Position
Unknown
AA seq
1095 aa
AA seq
DB search
MAAAALAAGGGPGSGPAAAPAGGPGPALAAARRKDGGPAGKFWESPDTVSQLDSVRVWLG
KHYKKYVQADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCH
ILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMTIEKTLVQNNCLSRPTIYLIPDMELKL
ANKLKDIVKRHQGTVTEEKSKATHHVYPSPTSVDDDEWLRPVMKKDKQVLVHWGFFPDSY
DTWVHASEIEAEIEDAPIPEKPWKVHAKWILDTDVFNEWMNEEDYEVDENRKSVSFRQRI
SMKNEEPVRSPERRDRKAAASTRKRKHSPSPPPTPVESRKKTGKKGQAALYGKRRGQKEE
DEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETVATGGK
EDEDPNKGDQSRSLDAGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKS
KTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLINYQVDP
ESRPMAMGPPPTPHFNVLADTPSGLMPLHIRTPQVPAAQQMLSFPEKNKEKPTDLQNFGL
RTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF
LRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEE
FSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPEEPEKMDGAEEEKM
ETEAEGQPAEKVESKAESEPEEGEKVPEGESERNVDKEPESEGAAEPKTEEKEAEENKEN
VDGSKDKEAEAGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVE
TQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQ
HSQNPQQPHQHPSGPGITPLGAPAHPGLLPHQQPPPYPMMHHQMPPPHPPQPGQLPGSLL
PGQPLPGRMIPASIHGGGGGGAAPPGMAPMAGNLLGPRVPLAAPNGMYPGPAQPPPPAEG
VTPPPAGAPPASAAP
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcgctggcggcgggcggaggccccgggagcggccccgcggcggctccg
gcgggcgggcccggccccgcgctggccgcggcgcgccgcaaggacggcggccccgccggc
aagttctgggagagccccgacaccgtgtcccagctcgactcggtccgcgtgtggctgggg
aagcactacaagaagtacgttcaggcagatgctcctaccaataaaaccttggctgggctg
gtggtgcagctgctgcagttccaggaagatgcctttggaaaacatgtcaccaatcctgcc
ttcacaaagcttcctgcaaagtgcttcatggatttcaaagctggaggtacattatgtcac
attcttggtgctgcttacaaatataagaatgaacagggctggaggaggtttgacctgcag
aatccctcccgcatggaccggaacgtggagatgttcatgaccattgagaaaacactggtg
cagaacaactgtctgagcagaccaaccatctacctcattcctgacatggagctgaagctg
gccaacaagctgaaggacattgtcaagcgtcaccagggaacagtcactgaagagaaatcc
aaggctacccaccacgtgtatccaagtcctacctcagtggatgatgatgagtggttgaga
cctgtgatgaaaaaggacaagcaggtgctggtacattggggcttttttcctgacagctac
gacacctgggtccacgccagcgagatcgaggcggaaatcgaggatgcgcccatccccgag
aaaccctggaaggtccatgccaagtggattctggacacggatgtgttcaatgagtggatg
aatgaggaggattatgaggtggatgagaacaggaaatccgtcagcttccgccagaggatc
tccatgaaaaatgaggagcctgtgaggagccctgagaggagggacaggaaagcagcagcc
agcacaaggaagaggaaacactccccttctccaccccccacgcctgtggagtccaggaaa
aagacagggaagaaagggcaagcagctctctatggcaaaaggagggggcagaaggaagag
gatgagcaggaggatctcaccaaggacatggaggatcccaccccagtacccaacatagaa
gaagtggtacttcccaaaaatgtgaacccaaagaaggacagtgagaacacgcccgtgaaa
ggaggaaccgtggcagacctggatgagcaggatgaggagacagtggcaactggaggaaag
gaggacgaggaccccaacaagggtgaccagagccgctccctggacgcgggggaggacaat
gtcaccgagcagaccaaccacatcatcatccccagctacgcctcctggtttgactacaac
tgcatccacgtgattgaacgtcgcgcgcttccggaattcttcaacgggaaaaacaagtcc
aagactccagaaatatacctggcctacaggaacttcatgatcgacacgtaccggctgaac
ccgcaggagtacctgaccagcactgcctgcaggaggaacctcaccggggacgtctgtgct
gtcatgagggtccacgccttcctggagcagtgggggctcatcaattaccaggtggacccc
gagagccgccccatggccatggggccccccccgaccccccacttcaacgtgctggctgac
accccctcggggctgatgccgctgcacatccgcaccccgcaggttccagctgcccagcaa
atgctgagcttccctgagaaaaacaaggagaagccaactgacctgcagaactttggcctt
cgcacagacatctactccaaaaagactctggccaagagtaaaggtgcaagtgctggcaga
gaatggacagagcaggagacactgctgctgttagaggccctggagatgtacaaggacgac
tggaacaaggtgtcggagcacgtgggcagccgcacgcaggacgagtgcatcctgcacttc
ctgcgcctgcccatcgaggatccctacctggagaactcggacgcctcgctgggccccctg
gcctaccagcccgtgcccttcagccagtcgggcaaccccgtcatgagcactgtggccttc
ctggcctccgtggtggatccacgcgtggcctcagccgccgccaaggccgcccttgaggag
ttctcccgggtcagagaggaggtgcccctggagctggtggaggcccacgtgaagaaggtg
caggaagcagctcgagcctctgggaaggtggatcccacctacggcctggagagcagctgc
atcgctggcacgggccctgaggagcctgagaagatggatggagctgaggaagagaagatg
gaaacagaggcagaggggcagccagcagagaaggtggagagcaaagccgagagcgagcct
gaggaaggggagaaggttccagaaggggagagcgagcggaacgtggacaaggagcccgag
agcgaaggggctgcagagcccaagacagaggaaaaggaggcagaggagaacaaggagaac
gttgatggcagcaaggacaaagaagctgaggctgggaagaagaaagtggagcacgagatc
tcagaaggaaacgtggccacagctgcagctgctgccctggcctctgctgccaccaaagcc
aagcacctggcagctgtggaggagaggaagatcaagtccctggtggcccttctggtggag
actcagatgaagaagctggagataaagcttcgccactttgaggagctggaaaccatcatg
gaccgggagaaggaggcactggagcagcagaggcagcagctgctgactgagaggcagaac
ttccacatggagcagctcaagtacgccgagttgagggctcgccagcaaatggagcagcag
cacagccagaacccccagcagccccaccagcaccccagtgggcctggcatcacccccctg
ggggcaccagcacacccagggctgctgccccaccagcagcccccaccctaccccatgatg
caccaccagatgccacctcctcacccacctcagccaggccagctgccgggctccctgctg
ccgggccagcccctgccgggccggatgatccctgccagcatccacggcggcggcggcggc
ggggcggccccgcccggcatggccccgatggccgggaacctgctggggccacgcgtgcca
ctggctgcccccaacggaatgtaccccggcccggcgcagcccccgcctcccgcggaagga
gtgaccccacccccggccggagccccgccggcctctgccgctccctaa
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