Agelaius tricolor (tricolored blackbird): 139605108
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Entry
139605108 CDS
T10815
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atrc03041
]
139605108 (YTHDC2)
Enzymes [BR:
atrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139605108 (YTHDC2)
Spliceosome [BR:
atrc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
139605108 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
R3H
OB_NTP_bind
Helicase_C
DEAD
AAA_19
HA2_N
Ank_2
nSTAND3
AAA_22
ATPase
PhoH
AAA_23
Ank_4
ResIII
UvrD-helicase
AAA_7
AAA_29
AAA_16
Motif
Other DBs
NCBI-GeneID:
139605108
NCBI-ProteinID:
XP_071312593
LinkDB
All DBs
Position
Unknown
AA seq
1427 aa
AA seq
DB search
MSRHRRVPRRQPSGATGGSVAAAAVRARAEALREVGVDEEVEMAVQLALERFRRGDEAEM
EFPSSFTSSERAFVHRLCQSLGLVSKSKGKGANRYLTVRKKDVSDAHAVMTCDLALRTKH
AVRSLIQSFPVTNKERTELLPRTERGHACAVESENKEVNKTSGRLNDGIPQVPVKRGESE
LDSFRQSLPVLEKQEEIVQIIKDNKIVLIIGETGSGKTTQIPQFILDDCYKNGTPCRVFC
TQPRRLAAVAVAERVAAERREKIGQTIGYQIRLESRVSPKTLVTFCTNDMLLRTLMAGDG
TLSTVTHVIVDEVHERDRFSDFLLIKLRDVLQNQNTLKLIISSAALDANLFIRYFGSCPV
IHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYKKEKQQEEKQKSTLAEWCSAQESMNKLT
SRRQKSVPRANEEYKWLDEGGDTVFNQLTEKDVNCLEPWIVKEMDSCLSDIWLHKDIDSF
AQVLNLILTENVSVDYRHSETGATALMISSGRGFLSQVEQLISMGASIHCKSSNGWMAVD
WARRFGQTEVVDLLESYSASFGFGNLDESSLIQKSGSDLSAEDRELLTAYHHSFDDEKVD
LDLIMHLLHSICHSCDAGAILIFLPGYDEIVSLRDRILFDDKRFADNAHRYQVFMLHSSV
QTLDQKKVLETPPSGIRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALSRVTMLKM
GWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQSPELLRMPLQEICLYTKLLAP
INCPIVDFLMKAPDPPPAVTVRNAVHMLKTIDAMDPWEDLTELGYHLTELPVEPHLGKMV
LYAVVLKCLDPVLTIACALACQDPFVLPTLASQKRAAMLCRKRFAAGTFSDHMALLRAFQ
AWQKARSDGWERAFCEKNFLSQATMEIIVGMRTQLLGQLRASGFVRARGGADIRDVNTNS
ENWAVIKAALVAGMYPNLVHVDRESLVLTEPKEKKVRFHPTSVLGQSQYKKIALANGQAA
AIQALPTDWLIYDEMTRADKTANIRCCSVVTPVTVSLFCGPARLPSNALQASSSFRGGGV
SNDSSDSEMEDKTTANLALLKLDEWLHLKLDPEAAGMLLQLRQKWHSLFLRRMRAPSKPW
SQVDETTVRAITAVLSAEEQSAGLQQPSGIGQRPRPVTCEELPLASTWKSTNSRKSSTET
ELSDSSNAEKVSVKSTSPALHQPKKYKEKDILLSKRSSDDRSAQSSVKPSDSSSYSSPCA
SPSSPVSGKGCKSPSPRQNMPVRYFIMKSSNLQNIDISQQKGIWSTTPSNERKLNGAFWE
SSVVYLIFSVQGSGCFQGFARMGSAIGCEKSQDWGSAGFGGVFKVDWIRKESIPFQFAHH
LLNPWNDSKKVQISRDGQELEPQVGEQLLQLWDRIPLAGKKLTEHAK
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgacacaggcgggtcccgcggcggcagcccagcggggccacgggggggtcggtt
gccgccgccgcggtgcgcgcccgggccgaggccctcagggaggtcggcgtggacgaggag
gtggaaatggcggtgcagctcgccctggagcggttccggagaggggacgaagcggagatg
gaatttccttctagtttcactagtagtgaaagagcatttgttcaccggctctgtcagtct
cttggactggtatctaaaagcaaaggaaaaggcgccaatcgatacctgactgtaaggaag
aaggatgtatcagatgcacatgcagtcatgacttgtgacttggctctccgtacaaagcac
gccgttcggagtctcattcagagctttcctgtcacaaacaaggagcgcacagaactcctg
ccaaggacagagagaggacacgcctgtgctgttgaatctgaaaacaaagaagtaaacaag
acaagtggtcgacttaatgatggtatcccccaggtgccagtgaaaagaggggaatcagag
cttgattcctttaggcagtcactaccagttcttgaaaaacaggaagaaattgtccaaata
ataaaggacaataaaattgttttgattataggagagactggatcaggaaaaactacgcaa
atccctcaatttatccttgatgactgctacaagaatggaactccctgtcgtgtgttttgt
actcagccaagacgtttagcagctgttgctgtggctgaacgagtggcagcagaaagaaga
gagaagattggccagacaattggttatcagatccggttagaaagcagggtttctccaaag
acactggtaacattctgcactaatgacatgctccttcgcacactgatggcaggagatggc
accctctccaccgtgacccatgttattgtggatgaagtgcatgagagggataggttcagc
gacttcttgctaataaaactgagagatgtgctgcaaaaccagaatactttaaaactaatt
atttctagtgctgctctagatgcaaatctctttattaggtattttggaagctgcccagta
atacatatccaagggagaccttttgaagttaaagagatgtttctggaggacattttacga
agcactgggtatacaaacaaagagatggtgaagtacaaaaaagagaagcagcaagaagag
aaacagaagagcactcttgctgagtggtgttcggctcaagaaagcatgaacaaactgaca
tctcggagacaaaaatcagttccaagggcaaatgaggagtacaaatggttggatgagggt
ggtgacactgtctttaatcaactgactgaaaaagacgtgaattgccttgaaccgtggata
gtaaaagaaatggattcctgtctttctgacatctggttgcataaagatattgattcgttt
gctcaggtcttaaatcttattttaactgaaaatgtcagtgttgattataggcacagtgaa
actggtgcgactgctctgatgatttcttcagggagaggctttttgagtcaagtggaacag
ttgatcagtatgggagcaagtatccactgcaaatcatctaatggctggatggctgtggac
tgggctaggcgctttggacagacagaggttgtggatctgttggaatcctacagcgcttca
tttggatttggaaatctggatgaaagttccctgatccaaaaaagtggtagtgaccttagt
gcagaggacagagaactactgacagcttatcatcacagttttgatgatgaaaaagtggat
ctggatctgataatgcacttacttcacagcatctgtcatagttgtgatgcaggagcaatt
ttaatatttcttcctgggtatgatgagatagtgagcctgagggaccgcattctttttgat
gacaagagatttgctgataatgctcacagataccaagttttcatgcttcattcaagtgtg
cagactttggatcagaagaaagtgcttgaaactccaccttctggcatccgcaaaattatt
ctttctactaatattgcagaaaccagcataacagtcaatgatgttgtgtttgtcattgac
tcgggcaaggtgaaagagaagtcttttgatgcactgagtcgtgttacaatgctaaaaatg
gggtggatttcaaaagccagtgctatccagagaaagggcagggctgggcgctgtcagcct
ggagtctgttttcgtctcttcagcaggctccgatttcagaatatgttggaatttcagtct
ccagaacttctcagaatgccacttcaggagatttgtttgtacacaaaacttctggctcca
attaattgtccaattgtagactttcttatgaaagctcctgatcctccgcctgctgtaact
gtgagaaatgctgtgcatatgcttaagaccatagatgccatggacccttgggaagatctc
actgagcttggttatcacctcactgaattacctgtagagccacaccttggtaaaatggtg
ttgtatgctgtagttctgaagtgcctggatcctgttctgaccattgcctgcgctcttgcc
tgccaagacccttttgtgctgcccacgctggcctcccagaagcgtgcggccatgctgtgc
aggaagcgttttgctgccgggacattcagtgaccacatggccctgctcagggctttccag
gcatggcagaaggcacgcagtgatggctgggagagggccttctgtgaaaagaacttcctg
tcccaagccacaatggaaatcattgtaggaatgagaacacagttgcttggccagcttaga
gcctcaggttttgtgagggccagaggaggagctgatattagagatgttaatactaactct
gagaactgggctgtaattaaagctgccttagtggccgggatgtatcccaatcttgtgcat
gtagacagagaaagcctggtgttgactgaaccaaaggagaagaaagtgcgatttcatcct
acctctgttcttggtcagtctcagtataaaaagattgccctagctaatggacaagctgca
gccatccaggccctccctacagactggcttatatatgatgaaatgacaagagctgacaag
acagcaaacatcaggtgctgctctgttgtgacacctgtcaccgtgtccctcttctgtgga
ccagccaggctgccaagtaatgccttgcaggcatcttcatcctttcgaggaggaggggta
tctaatgatagcagtgacagtgagatggaggacaaaacaactgctaatctggcactactg
aagctggacgaatggctccatctcaaactggatcctgaagctgctggtatgctgttgcaa
ctcaggcagaagtggcacagtttgttcctgcgtcgtatgcgagctccttctaaaccatgg
tctcaggttgatgaaacaactgtaagagcaattacagctgttctgagtgctgaagaacag
tctgcaggtctgcagcagccttcaggaatcggccagagaccaagacctgtgacttgtgaa
gaacttcctttggcatctacatggaagtcaaccaacagcagaaaaagctcaacagaaact
gaattgtctgactcttctaatgctgaaaaggtttcagtgaaatctacatctcctgccctc
caccagccaaagaagtacaaagaaaaagacattttgctctccaaacgatcctcagatgac
agatcagctcagtcctcagtgaagccttcagacagcagtagctattccagcccctgtgct
agtccttcttctccagtgtctggaaagggttgcaaatctccttcaccaagacaaaatatg
ccagttcggtactttataatgaaaagtagcaacttgcaaaacattgatatttctcaacag
aagggaatatggtccactacaccaagtaatgaacggaaactgaatggagccttttgggag
agcagcgtggtttacttaatattttctgttcaagggtctggatgctttcagggttttgct
agaatgggttcagcgattgggtgtgagaaaagtcaagactggggatctgctggttttgga
ggtgtatttaaggtggactggatccgaaaagaaagcattccttttcagtttgcacaccat
ttgctcaacccatggaatgacagcaagaaagtacagataagtagggatggccaggagctg
gaaccacaagttggagagcagttgctgcagctttgggaccgtattcctttggcaggaaaa
aaactgactgagcatgccaagtaa
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integrated database retrieval system
