Amaranthus tricolor (tampala): 130797053
Help
Entry
130797053 CDS
T09367
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri00040
Pentose and glucuronate interconversions
atri01100
Metabolic pathways
Module
atri_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
130797053
Enzymes [BR:
atri01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
130797053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
ThermoDBP-RP_arch
Motif
Other DBs
NCBI-GeneID:
130797053
NCBI-ProteinID:
XP_057515514
LinkDB
All DBs
Position
12:complement(1199329..1204140)
Genome browser
AA seq
409 aa
AA seq
DB search
MIEINIHIFFLFLVSMVLLNLPTSSSSSLSSIDASTKVVYNVLKFGANPRGKTDTSKAFL
SAWEAACNTNGSTSIIVPKGRYLLHPINFEGYNCMSNDITFIIDGTIVAPIDYHLLGEVQ
RWVGFYRVSGLTIYGHGTFDAKGTSLWDCKKGINGDKCPLGATTLTFTNSNNIVTKGISS
LNSQLYHIVINNCKNVQVQAVKIRATGNSPNTDGIHVQFSSDVTILNTNIKTGDDCVSIG
PGTKNLWIERIACGPSHGISIGSLAKDEDEEGVQNVTVKTAVISYSTTGVRIKSWGRPSN
GFVQGVVFQDILMRYVWNPIIINQNYCPHNKNCPGQDSGIEIKDVKYQNIRGTSLSKVAM
TFDCSATNPCKEIKLQNVNLKYIDGEAESYCQNAFGNVYGLISPTTCLI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagatcaacatacacatatttttcctatttttggtttctatggtactattaaac
ctaccaacatcgtcatcttcatctttatcttctattgatgctagtacaaaggtcgtctat
aacgtactaaaatttggtgcaaacccaagaggaaaaaccgatacaagcaaagctttcctt
agtgcatgggaagctgcatgcaacacaaatggatcgacgtcgataattgttcctaaggga
agatatttgcttcatccaataaactttgaaggttataattgtatgagcaatgatataacg
tttattatcgatggaacaattgtagccccaattgattatcatttgcttggtgaagtccaa
agatgggtagggttttatagggttagtggtcttacaatttatggtcatggtacctttgat
gccaaaggaacgtccttgtgggattgtaagaagggtataaatggtgataaatgtcctcta
ggtgcaacgacattgacatttaccaactccaacaacatagtgaccaaaggcattagttcc
cttaatagccaattgtaccatattgtgatcaataactgcaaaaatgttcaagttcaagca
gtaaaaattagagctaccggaaatagtcctaacaccgatggtattcacgtacaattctca
tcggacgttaccattctcaacaccaatattaaaaccggagatgattgtgtctctattgga
cctggaactaaaaacttgtggatcgaacgtatcgcttgtggccctagtcacggaattagt
attggaagcctagcaaaagatgaggatgaagaaggggtacaaaatgtaacagtaaaaaca
gcagtaatttcttactcaacaactggagttagaatcaagtcatggggaaggccgagtaat
ggctttgttcaaggtgttgtatttcaagatattcttatgcgctatgtttggaatcctatt
atcattaatcaaaattattgccctcataataaaaattgtcccggtcaggattcgggaata
gaaatcaaagatgtgaagtatcaaaatataagaggaacttcattaagcaaagtagcaatg
acatttgattgtagtgccacaaatccatgcaaagaaattaaactccaaaatgtaaatctc
aaatatattgatggagaagctgaatcatattgtcaaaatgcatttggcaatgtctatggc
ttgatttcacccactacttgcttgatataa
DBGET
integrated database retrieval system
