Amaranthus tricolor (tampala): 130797232
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Entry
130797232 CDS
T09367
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
130797232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atri04121
]
130797232
Ubiquitin system [BR:
atri04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
130797232
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
DUF7885
F-box
Motif
Other DBs
NCBI-GeneID:
130797232
NCBI-ProteinID:
XP_057515730
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All DBs
Position
12:3858209..3863554
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AA seq
608 aa
AA seq
DB search
MEQESPAPKSQFKKPTSNNQSFSSISTNFPEEVLEHVLSFIESHSDLNSVSLVCKSWYEI
ERWCRRGIFIGNCYAVSPPIVIRRFKDLRSVTIKGKPHFADFNLVPEGWGAYAYPWIEAF
CEAFPALEELRMKRMVVTDEGLELIGNKLRNFKVLVLCSCEGFTTDGLAFIAANCRNLRT
LDLCESEVEGSGEWIRFFPDSYTSLESLNVACLTTEPWFNHLEGLVSRCTNLKSLRLNRT
VSLERFTTLLEKAPQLVDIGTGSFSTETSAEAYEKLTKAFVGCKGLKGLSGLYDVVPNYL
PALYPVCSGLTSLNLSYAAIHSPDLIKLLGLCQNLQRLWVLDYIEDSGLEVLAESCKDLK
ELRVFPSEPYAEEPNVCLTEQGLVSVAMGCPKLQSVLYFCRQMTNEALFTIAKNRPNLTR
FRLCIIEPQCPDYLTRKPLDEGFGAIAEHCKNLCRLSLSGLLTDYVFKLIGTHAKKLEML
SLAFAGDSDSGLDHLLSGCKNLRKLEIRDCPFGGKALVVNAAKLMTMRSLWMSSCQVSYG
ECKLLGKKMPRLNVEVMNERENPDSRSDDCSVEKLYIYRSVVGPRSDSPDFVWTMNEENL
ASDVSLSH
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggagcaagaatctccagcacccaaatctcagtttaaaaaacccacctcaaataaccaa
tccttttcttctatctctacaaatttccctgaagaagtacttgagcatgtactatccttc
attgagtcacattcagaccttaactcggtctcactcgtttgcaaatcatggtatgagatt
gaaaggtggtgtcgtcgtgggatctttattgggaattgctatgctgttagccctccgatt
gtaatcagacgctttaaagatctccgatctgttactattaaaggaaaacctcattttgct
gattttaatcttgttcctgaaggttggggggcatatgcttacccatggattgaggcattt
tgtgaagcttttcctgccttggaagagcttagaatgaaaagaatggtggttactgatgaa
gggcttgagttgattgggaataaattgagaaattttaaggttttagttttgtgttcttgt
gaaggttttactactgatgggttagcttttattgctgctaattgcaggaatttgagaact
ctcgacttgtgtgagagcgaagttgaaggcagtggggaatggatacgcttttttcccgat
tcttacacatcactagaatctcttaatgttgcctgtcttaccacagagccatggtttaat
catcttgagggtttagtcagcagatgcactaaccttaaatcactccggctcaaccgtaca
gtgtctttagagaggtttacgactcttctcgaaaaggcaccgcagttggttgatatcggc
acaggctcattttcgactgagaccagcgccgaagcgtatgagaagctcacaaaggcgttt
gtgggatgcaaagggctcaagggtctttctggtctctatgacgtcgtccctaattatctt
cctgccttgtatcctgtctgctcggggctgacgtctttgaacctgagttatgctgccatt
cactcccccgatctcatcaaacttcttggtctctgtcagaatctgcagcgtctttgggtc
cttgattacatagaagacagtgggcttgaagtgcttgcggaatcatgcaaggatctcaag
gagctacgggttttcccttccgagccttatgccgaggaaccaaatgtttgcttaactgaa
caaggtctggtatccgtcgctatggggtgtcctaaattgcagtccgtcctctacttttgc
cgtcaaatgaccaacgaagcattattcaccatagcgaaaaatcgccccaatctaacccgc
ttccgtctatgcatcattgagcctcagtgtcccgattacctaacaagaaaacctcttgac
gagggtttcggggcgattgccgaacattgtaagaacctctgtcgcctttcgttatcaggt
ctcctcaccgactatgttttcaagctcatagggacccatgccaaaaaactcgagatgctt
tccttggcatttgccggagatagtgattcaggtttggaccatcttttatcagggtgcaag
aacctgaggaagctcgagataagggattgcccgtttggtggtaaggcactcgtggtaaac
gcagccaagttgatgacaatgcgatccctttggatgtcttcgtgtcaagtgagctatggc
gagtgtaaattacttggcaagaagatgccgaggttgaacgtagaggtcatgaatgaacgg
gagaaccctgattcaaggtccgatgactgttcggttgagaagctttacatctaccgatca
gttgttggaccaaggtcagattctcccgacttcgtttggactatgaacgaagaaaatctg
gcttcggacgtaagtttatcacattaa
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