KEGG   Amaranthus tricolor (tampala): 130797237
Entry
130797237         CDS       T09367                                 
Name
(RefSeq) uncharacterized protein LOC130797237
  KO
K15361  WD repeat-containing protein 48
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    130797237
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:atri03400]
    130797237
DNA repair and recombination proteins [BR:atri03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     130797237
SSDB
Motif
Pfam: WD40 DUF3337 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_EML Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_EIPR1 RAWUL Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_RIG_2nd ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IP5PC_F Beta-prop_DCAF12 Beta-prop_WDR75_2nd
Other DBs
NCBI-GeneID: 130797237
NCBI-ProteinID: XP_057515737
LinkDB
Position
12:complement(3931024..3949017)
AA seq 759 aa
MHRVGSAGNTSGSSRPRKEKRLTYVLNASDDTKHSAGINCLARLKSNESGSSEFLFTGSR
DGTLKRWAVDDKAATCSTTFESHVDWVNDAVLVGDHTLVSCSSDTTLKTWNSLSNGACTR
TLRQHSDYVTCLAAAEKNINTVASGGLGGEVFVWDIEAALAPVSKSNDSIEEEASNGISG
GGSNLPITSLRTINSSNNISLNSTPNHGYVPIAAKGHKESVYALAMNDSGTILVSGGTEK
VVRVWDPRSGSKTMKLRGHTDNVRALLLDSTGRFCLSGSSDSMIRLWDLGQQRCVHSYAV
HTDSVWALAITNSFTHVYSGGRDQSLYMTDLNTRESILLCAEDYPILQLALDDESIWVAS
TDSSVNRWPAEGHNPQKMYQRGGSFLAGNLSFSRARASLEGSTPIPVYRESTLKVPGIPA
IVQHEILNNRRRVLTKDTAGSVKLWEITRGAVIEDYGEVSYEDKKKELFEMVSIPTWFTV
DTRLGSLSIHLDTPQCFSAEMYSADLNIAGKPEDDKVNLARETLKGLLAHWLAKRKQRSG
SQSTANGEAQSVKEISSRSMTHSRIEVDGNAENDSMIYPPFEFSAVYPPSIITEGSQGGA
WRKKITDLDGTEDEKDLPFWVMDCVLNNRLPPRENTKCSFYLHPCEGSTIQILTQGKLSA
PRILRIHKVVNYVVEKMVLDKSSDGASGDGTFAPGLAGGPLQTGADGSLRRPWQRLKPAI
EILCNNQVLSPDMSLATVRAYVWKKPEDLVLHYRVVQGR
NT seq 2280 nt   +upstreamnt  +downstreamnt
atgcatcgagtaggcagtgcagggaatacctctggttcgagtcgccctaggaaggagaaa
agattgacatatgttcttaatgcttctgatgacacaaagcattctgccggcataaattgc
ttggccaggttgaagtccaatgaatctggtagtagtgagttcttgtttactggtagccgt
gacggaacgttgaagagatgggctgttgacgacaaagcagctacttgctctactactttt
gaatctcacgtggattgggtaaatgatgctgtccttgttggtgatcatacacttgtgtct
tgctcttcggacactactcttaagacatggaatagcttgtctaatggtgcatgcacgagg
actctgcgtcagcactcagactatgttacctgtcttgctgcagcagaaaaaaatataaat
actgttgcctctggtggcctcggtggggaggtgtttgtttgggatatcgaagctgcactt
gctccagtttctaagtcaaatgacagtattgaagaagaggcttccaatggaattagtggt
ggtgggagtaatctgcctattaccagtttgcgcacaatcaattccagtaataacatctct
ttgaattctactccaaatcatggttatgttcctattgctgccaaaggccataaggaatca
gtgtatgcattagcaatgaatgatagtgggactattcttgtttctggtggaactgagaag
gttgtgcgtgtttgggacccgagatcgggttcgaagaccatgaagttgaggggtcacaca
gataacgttagagcattgctcttggattctactggaaggttttgtttgtctggctcttct
gattctatgatcagactatgggatctaggtcagcagcgctgtgtgcattcatatgctgtt
catacagattctgtctgggctcttgccatcacaaattcatttactcatgtctacagcggt
ggaagagaccaatctttatacatgacggacttgaacactagagagagcattttgctttgt
gcagaagattacccaattttgcagttggcactggatgatgaaagcatatgggttgcaagt
acagattcttcggttaataggtggcctgcagaaggacacaatcctcagaaaatgtaccaa
agaggaggttccttcttggctgggaacctatcattttcaagggcaagagcttcccttgaa
ggatccactcctattccagtataccgggagtcaacactcaaagtacctggaattccagcg
attgtgcagcatgagatattgaataatcgaaggcgtgttcttaccaaggatacagctggt
tctgtgaaactatgggaaatcacaaggggtgctgtgattgaagattatggcgaggtatca
tatgaggacaaaaagaaggagctatttgagatggtgagcattcctacatggttcactgtg
gataccaggctaggtagtttgtctattcatttggatacaccacagtgcttttcagctgag
atgtattctgctgatcttaacatcgctggaaaacctgaggatgataaggtcaatctagct
cgagaaacactgaagggcttattggctcattggttagcgaaaagaaaacagagatcagga
tctcaatcaacagcgaatggtgaagctcaatcagtgaaagaaatctcctccagaagcatg
acccactcacgaattgaagttgatggaaatgcagaaaatgattcaatgatatatcctcca
tttgaattttctgctgtttatcctccgtctatcattactgagggttctcaagggggagca
tggaggaaaaagataactgatttggatggcacggaagatgaaaaggatctccctttttgg
gttatggattgcgttttaaacaatcgtctacctcctagagagaataccaagtgtagcttt
tacttgcatccatgtgaaggttccacaatccaaatcttaacccaggggaagctgagtgct
cctcgtatattaagaatacataaggttgtcaactatgttgttgaaaagatggtccttgac
aaatcatcggatggcgcgtctggtgatggtacgtttgctccagggttagctggtgggccc
ttgcagactggagcagatggatctctccgtagaccctggcagcggctaaagcctgcgatt
gagattttgtgtaataatcaggtattatctcccgatatgagcttggcaacagtacgagct
tatgtatggaaaaaacctgaagatcttgtacttcattatcgtgtggtgcagggaaggtga

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