Amaranthus tricolor (tampala): 130797327
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Entry
130797327 CDS
T09367
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130797327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130797327
03012 Translation factors [BR:
atri03012
]
130797327
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130797327
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130797327
Translation factors [BR:
atri03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
130797327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
Myosin_head
PhoH
ABC_tran
AAA_23
AAA_16
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
130797327
NCBI-ProteinID:
XP_057515873
LinkDB
All DBs
Position
12:complement(11488217..11503109)
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AA seq
1155 aa
AA seq
DB search
MHSMLRFLLLSGKSSIYSSPYSTNSTANHSVFHFLNSSLSNRPKFSQQYLGILQSFLFSP
RSFSDYAVEQFSDDEYECDFETNTASSSVANIDEWKWKLSVLLRNEQELEIVSRDKRDRR
DFEQISNLARRMGLHCEIYGKVVVASKVPLPNYRPDLDDKRPQREVTIPLSVQRRVESLL
QEHLDRIKLSPGKCNDSSLECKASDADRNLTLDGESDSMLDVSVVEKILQRRSLRLRNMQ
RAWHESPEGRKMLGFRKSLPAFDEKERLLQAIAKNQVIVISGETGCGKTTQLPQYILESE
IESGRGAFCNIICTQPRRISAMSVAERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCT
SGILLRRLLSDRNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNA
ELFSNYFGGAPMIHIPGFTYPVRAHFLEDVLEITGYKLTSFNQIDDYGQEKVWKTQRQLV
PRKKKNQITTLVENALKDSSFENYSPRARDSLSCWSPDCIGFNLIEAVLCHICRKERPGA
VLVFMTGWEDISCLKEQIKAHPLLGDPNRVLLLTCHGSMATSEQKLIFETPPLNVRKIVL
ATNMAEASITINDVVFVVDCGKAKETTYDALNNIPCLLPSWISKASARQRRGRAGRVQPG
ECYHLYPSCVYKAFADYQLPELLRTPLNSLCLQIKSLQIGSIAEFLSAALQPPESLAVQN
AIGFLKMIGALDENEHLTNLGKYLAMLPVDPKLGKMLIMGAIFCCFDPVLTIVAGLSVKD
PFLLPQEKKDLAGIAKARFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTL
QAIHSIRKQFNFILKDAGLIDEDVTSNNKLSHNQSLVRAVICSGLFPGIASVVHRETSMS
FKTKDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILMLFGGALS
NGGQPGHLKMLDGYAEFFMDPNLAESYGKLKEELDKLLQKKLEDPTIDILKEGKYLMFAV
QELVSGDQCEGRFVFGRESKKPKDPTDNNRFTRDGMNPKSLLQTLLMRAGHSPPKYKTKH
LKTNEFRALVEFKGMQFVGKPQRNKQLAEKDAAIEALAWLTHTDHKIENEDDNSPPDVTD
NMLKLLGKRRKSKRH
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgcattctatgcttcgatttctattgctctccgggaaatcatccatatactcttcccca
tattctacaaattcgactgcaaatcattcagttttccattttctaaattcttcactatct
aatcgcccaaaattcagccaacaatatcttggtattttacagagttttctcttctcacct
cgctctttttctgattatgctgttgagcaattctctgatgatgaatatgagtgcgatttt
gaaacgaatacggcatcctcttcagtggcgaatattgatgagtggaagtggaaactcagc
gttctgttacgcaatgaacaagagctggagattgtgtctagagacaagagagatcgtcga
gatttcgagcagatttcaaatcttgctagaagaatggggcttcactgtgagatatatggg
aaggtggttgttgcaagcaaggtcccacttccaaattaccggccagaccttgatgataag
cggcctcaaagagaggtgacaattccattaagcgtacaaaggagagtggaaagtttactc
caggaacatctggataggattaaattgagcccgggaaaatgtaatgatagttcactggaa
tgtaaggcctcagatgctgataggaacctcactttggatggggagtcagatagtatgtta
gatgtttctgttgtggaaaagattcttcagaggaggagcttgcgattgcgtaatatgcag
agagcttggcatgaatctcctgaaggtaggaagatgctgggctttaggaaatcactgcct
gcatttgatgagaaagagaggcttcttcaagcaattgcaaaaaatcaagtaattgtgatt
tcgggtgagactggatgtggtaaaaccacccaactccctcagtacattttagagtcggag
atagagtctggtcgtggtgcattctgcaacattatctgcacacagcctcgaagaatatct
gccatgtctgttgcagaacgagtgtctgcagagagaggagagcctcttggtgaaaccgtt
ggatataaagtccgtttagaaggaatgaaagggaaaaatacccatctacttttctgtacc
agtggtattttgctacgccgcctgttgagtgatcgaaacttgaatggggtgacccatgtc
tttgtggatgaaattcatgagcgaggaatgaatgaagactttctcttgattgtgctaaag
gatcttctccccagacgtcgggatttgaggttgattctaatgagtgctacattaaatgcg
gaactgttttctaattactttggaggtgcccctatgattcacataccgggatttacatat
cctgtgagggcacattttcttgaagatgtattggaaattacaggatataaattgacctca
ttcaaccaaattgatgattatggccaagaaaaagtttggaaaacacaaaggcaactagtg
ccaaggaagaaaaagaatcaaattaccactcttgttgagaatgctctgaaagattcaagc
tttgaaaactacagtccccgtgcacgggattctctgtcatgttggtcacctgactgtatc
ggttttaatctcatcgaagctgttttatgtcatatatgtcgaaaggaaaggcctggcgct
gttttggttttcatgactggctgggaggatattagttgcttgaaagaacagattaaagct
catccattgctaggagacccgaacagggttctgctactcacttgtcatggttcaatggct
acatctgaacagaaactgatatttgaaacgccgccactcaatgtacgtaaaatagttttg
gctacaaatatggctgaggctagcatcacaataaatgatgtagtctttgttgttgattgt
gggaaagctaaagaaaccacatatgatgctttgaataacatcccatgtctgctgccttct
tggatatcgaaggcttctgctcggcaaaggaggggcagggctggtcgtgtacagcctgga
gagtgctaccatttatatcctagctgtgtgtataaggcttttgctgactaccaacttcct
gaactcctgagaactccattaaactctctgtgtttgcaaataaaaagtttacaaattggt
agcattgcagaatttttgtcggctgctctgcagccaccagaatcattggcagtccaaaac
gcaattggttttctgaaaatgattggggctttggatgagaatgagcatcttacaaatctt
gggaaatatttggctatgctcccagttgatccaaaacttggaaagatgcttataatgggt
gccatcttctgctgctttgaccctgttctaacaatagtggcgggtcttagtgtcaaggat
ccttttcttttacctcaagagaaaaaggatttagctgggatagcgaaggccagattttct
gcaaaggattacagtgaccatatggcacttgttcgtgcatatgaaggatggaaagatgct
gagagagaaggatctgcttatgaatactgctggaggaatttcctctctgctcaaactctt
caggctatccattccattcggaagcaattcaattttattttaaaagatgctggcctaatt
gatgaagatgtgacttcaaataataagttaagtcataatcaatcattggtccgtgcagtc
atatgttctggcctgttccctggcatagcatctgttgtgcacagggagacgtcaatgtca
tttaagacgaaggatgatggacaagttttactctatgcgaactcagtcaatgcacgatac
cagacaattccctatccttggctagtctttggggaaaaagtaaaagtcaacactgttttt
atacgtgattcaacaggtgtctctgattcaatattgatgctctttggtggtgctcttagc
aatggagggcagcctgggcatttaaaaatgttggatggctatgctgagtttttcatggat
ccaaacctggcggagtcctacggcaagttgaaggaggagcttgataagctcttgcagaaa
aagcttgaagaccctaccattgacatcctaaaagaaggaaagtacctaatgtttgctgtt
caggaactagtatcaggagaccaatgtgaagggagattcgtgtttggccgtgaaagtaag
aaacccaaggatcctacggataataatagattcacaagagatggaatgaacccgaagagc
ttgctgcaaactttattgatgagagctggacattctcctcctaaatacaaaactaaacac
ttgaaaaccaatgagttcagggcactagtggaattcaagggcatgcaatttgtggggaag
ccccagaggaacaagcagctggccgaaaaggatgctgctattgaagctttggcgtggttg
actcacaccgaccacaaaattgagaacgaggatgataattctcctccagatgtcactgac
aatatgcttaaactccttggaaaacgtaggaaatctaaacgccattga
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