KEGG   Amaranthus tricolor (tampala): 130797331
Entry
130797331         CDS       T09367                                 
Name
(RefSeq) histone deacetylase 19 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03082  ATP-dependent chromatin remodeling
atri03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    130797331
   03083 Polycomb repressive complex
    130797331
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:atri03036]
    130797331
Enzymes [BR:atri01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     130797331
Chromosome and associated proteins [BR:atri03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     130797331
   HDAC complexes
    Sin3A-HDAC complex
     130797331
    BRAF-HDAC complex
     130797331
    REST complex
     130797331
    SHIP complex
     130797331
    MiDAC complex
     130797331
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     130797331
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    130797331
  Chromatin remodeling factors
   NuRD complex
    130797331
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 130797331
NCBI-ProteinID: XP_057515883
LinkDB
Position
12:complement(11534371..11546330)
AA seq 501 aa
MDSTGNSLPSGPDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ
VFKPVPARERDLCRFHADDYVSFLRGITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGAVKLNHGLCDIAINWSGGLHHAKKCEASGFCYVNDIVLAILELLKVHERVLY
VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPLDDGI
DDESYQSLFRPIMGKVMEVFKPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVKYMRSFN
VPLLLVGGGGYTIRNVARCWCYETGVALGIELDDKMPQHEYFEYFGPDYTLHVAPSNMEN
KNSRPMLDDIRAKLIDNLSKLQHAPSVPFQERPPDTELPEEDEDQKDPDERWDADSDMEA
DDHRPISIRNRVKREIIDPYAKVTEDVKEHVDHARDMAVSYGTGSTSLKAVNMGSDQQEA
CVKMELDSSNKPPDQPTDMIS
NT seq 1506 nt   +upstreamnt  +downstreamnt
atggactcaactggtaattctcttccatctggtccagatggggtgaaacgtaaagtatca
tatttctatgacccagaagttggaaactattactatgggcaaggtcaccctatgaagcct
catagaattcggatgacgcatgctcttttagctcattacggtttacttcaacatatgcaa
gtgtttaagcctgttcctgcaagagaaagagatctttgcaggttccatgctgatgattat
gtgtccttccttaggggcattacacccgaaacgcaacaggatcagttgaggcagctaaag
aggttcaatgttggtgaagattgtcctgtatttgatggcctgtactcgttttgtcagact
tatgctggtggttcagttggcggtgctgtcaagctcaaccatggtctttgtgatattgca
attaattggtcgggtggtttgcaccatgcgaaaaagtgtgaggcgtccggtttctgttat
gtgaatgatattgtattggcaattttggagcttctcaaagtccatgagcgtgttctatat
gtggacattgatatccaccatggtgatggtgttgaggaggccttttatactacagataga
gtcatgacagtgtcttttcacaaattcggggattattttcctggtacaggagatattcgt
gacattggatatggaaaggggaagtattattctcttaatgtgcctttagatgatggaatt
gatgacgagagctaccaatctctgtttagaccaattatgggaaaagtaatggaagtattc
aaacctggggctgttgttctgcaatgtggtgctgattctttatctggtgacaggttgggc
tgttttaacctctccattagaggccatgctgagtgtgtcaaatacatgaggtccttcaat
gtcccactactgttggttggtggaggtggatatactataagaaatgtagctcgttgctgg
tgttatgagactggggttgcccttggaatcgaacttgatgataaaatgccacagcatgaa
tactttgagtactttggtcctgattatacacttcatgttgctcctagtaacatggaaaac
aagaactcacgccccatgttggatgatattagagcaaaacttatcgacaatctctcaaag
ctacagcatgcaccaagtgttccattccaggagcgtcctcctgatactgagctaccggag
gaagatgaagatcagaaagatccagatgaaagatgggatgcagattctgatatggaggct
gatgatcaccgtcctatatcaatccggaaccgagtaaagagagagatcattgatccttat
gccaaagtaacagaggatgtcaaagaacatgtggatcatgcaagagacatggctgtctct
tatggcacagggagtacgtctttgaaggcagtaaacatgggttcagatcaacaagaagct
tgtgtgaaaatggagctggacagctcaaacaagcccccggatcagccgactgatatgatt
tcatga

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