Amaranthus tricolor (tampala): 130797501
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Entry
130797501 CDS
T09367
Name
(RefSeq) endoribonuclease Dicer homolog 3
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
atri03036
]
130797501
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
130797501
microRNA pathway
RISC loading complex
130797501
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GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
PAZ
DND1_DSRM
dsrm
DJ-1_PfpI
Motif
Other DBs
NCBI-GeneID:
130797501
NCBI-ProteinID:
XP_057516088
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Position
13:17844976..17854631
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AA seq
993 aa
AA seq
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MDILDDRHIDGCDETDQKLKGNALAGAGTTKRKELHGIINVRALSGTWINNLHGAVFHVY
KIDFSCDVEQYSSFVLLTESKLDVDIANVKVDLYLLDKTAKASVVPCGEVHLGSDKIKQA
MRFHELLFNGLFGKLFLGSKGRGTGREFLLQNDSDLLWSTSYMYLILPLESSDGLDQESW
KINWKEIESCVSVVEFLKKSAWLSAEQSGSKYRGFRDDLCSENMNISGEDVVHLANCSLS
RGNLKESVVMSIHTGRIYYVLDILVDTSSESPFDSDVGGKPSKKYSSFADYFNKKYGIVL
FYPGQPLLLLKQTHNPFNLLSDSEASELRRKKLSSRKLDDANQLNLVRMPPELLVHVDVH
VSVLRAFYLIPSIIHRMESLMLACQLREEIAYNFDDFHMPCSQILEALTTLRCCEDFSSE
RLELLGDSVLKYTVSCHLFLKYPEEYEGALSNHRQRTICNANLHVLGTNRGLQEYIRDSA
FEPRRWVAPGQLSAHPVPCSHGVNTTEVPLDSRYHSIDENIVLGKHCDRGHRWLVSKCIA
DCVEALIGSYYIGGGLKAALHVMNWLGIEAELGPFYVDKAITLASSQSCAQKLDHITALE
SKLGYDFVTKGLLLEAITHLTEQETGVGFSYERLEFLGDAVLDVLITRHLYHTHMDIDPG
ELTDLRSASVKNENFAQVSVRRNLYQHLQYNSDIISSQITEYLTLVSETSDSKLLQGREC
PKVLGDLLESIVGAVLIDTKLDVEEVWRIFKPLLSPIATPDNLDLPPFRELNELCDYLGY
FSKETCFTDKDGMFAELRLQLEGALLIGEGFGKTKKAAKGQAALHLLIELENRGISYDRC
FSKRKKKDAQDMSSVTVKKKYADVQSKKRKVVVLPGGNNKGASNATIPVIRAVNTEKGGP
RSSLYELCKTVQWPMPSFETSEHKSTSPIVMGEGSSKKTAYFIFMSKISLLIPDFGVLEA
DGEQRADKKSAQDSAALHLLLKLEQQGKLIISC
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggatattctagatgaccgtcatatagatgggtgtgatgaaactgatcaaaaactaaaa
ggcaacgcattagctggtgctggaaccacaaaaagaaaggagttgcatggaattattaat
gttcgtgccttatctggtacatggataaacaatcttcatggtgctgttttccatgtttac
aagatcgatttctcttgtgatgttgagcagtacagcagtttcgttcttctgactgagtca
aagctagatgttgatatagctaatgtcaaagtagatttatatttactcgacaaaactgct
aaagcatcggttgtcccatgtggcgaagtacatctgggatcggacaaaataaagcaggca
atgcgctttcatgaacttttatttaatgggttgtttggtaaattgtttcttggatcaaaa
ggaagaggtaccggacgagagtttcttctccaaaacgatagtgatcttctatggagcaca
tcatacatgtatttgatcttaccacttgagtcatcggatggcttggatcaagaatcttgg
aagatcaactggaaggagattgaatcctgcgtctctgtggtagaatttctgaagaaatct
gcttggttgagcgctgagcagtccggaagcaaatataggggttttagagatgacctttgt
tcagaaaacatgaacatctcgggtgaggatgttgtacatctggctaactgctcattgtcg
agaggaaacttgaaggaatctgtcgttatgtccattcacactggtcggatatattatgtt
ctcgacatcttggtcgatacgtcttctgagagtcccttcgattctgacgttggaggaaaa
ccatcaaaaaagtattctagttttgctgattacttcaacaaaaagtatgggattgtgctg
ttttatccagggcagccgttgttgcttctgaaacagactcataatccattcaatcttctc
tcggatagtgaggctagtgagttgcgtcgaaagaagctttcaagtcgcaaattggatgat
gcaaatcaactgaatcttgttcgtatgcctcctgagctcttggttcatgtagatgtccat
gtatcggtgttaagggcgttctatttaataccttcaataattcatcggatggaatctctg
atgttagcttgtcagctacgggaagagattgcgtacaattttgacgactttcatatgcca
tgctcgcaaattttggaagcacttacgactctaagatgctgtgaagatttctcttcagaa
cgtttggagttgctcggtgattcggtgctgaagtatacagtgagctgtcaccttttcctt
aaatatcctgaggagtatgaaggagcgttatccaatcatcgtcaaagaactatttgcaat
gcgaacttgcatgttttgggaactaatcgtgggttacaagagtacattcgcgatagtgca
tttgagccccgtcggtgggttgcccctgggcagctttctgcccatcctgttccttgttca
catggtgttaacacaactgaagttccgttggatagtcgatatcatagtattgatgagaat
attgtactcggaaagcattgtgataggggacaccggtggttggtttccaaatgcatagcg
gattgtgttgaagccctgattggatcatactatatcggtggtggattaaaggccgctctt
catgtcatgaattggctaggaatcgaagctgaattgggtccgttttatgttgacaaggct
attactcttgcatctagccaatcttgtgcgcaaaagcttgatcatatcacggccttagaa
tcgaagcttgggtatgactttgttaccaagggactgctactcgaagctattactcattta
acggaacaagaaactggggtgggtttttcctacgagaggctggaatttcttggggatgct
gtgctcgatgtgctgataacccgacatctatatcatactcacatggatattgatcccggg
gagttaactgacctgcgctcagcttctgtgaaaaacgaaaattttgctcaagtttctgtg
aggcgaaacctatatcagcatcttcagtataattctgatattatttcgagtcaaataaca
gagtatcttacgttggtttctgagacatcggattctaaattactgcaaggaagagaatgt
cccaaggttcttggcgacctgttggaaagtattgtcggggctgtactaattgataccaag
cttgatgtcgaagaagtttggagaatcttcaaaccattgttgtctcccattgcaactcct
gataatctcgatttgcctcccttccgtgaactgaatgaattgtgcgattaccttgggtac
ttctcgaaagagacctgtttcaccgacaaagatgggatgtttgcagaattgagattacag
ctggaaggtgctttattgataggggaaggattcggtaaaactaaaaaagccgccaaggga
caggcggctcttcatttgttgattgagctggagaacagagggatatcgtatgatagatgc
ttttcgaagaggaaaaagaaagatgcacaagatatgagttcagtcacggttaaaaagaag
tatgcagacgttcaatcaaagaagcgaaaggtagttgtgttgcctggtggaaataataag
ggggcttcaaatgctactattcctgttattagagcggtaaacacagagaaaggtggaccg
agaagctcactgtacgagttatgtaaaacagtacagtggcctatgcctagcttcgaaact
tctgaacataaatcaacatcgcctattgtaatgggcgaaggttcaagtaaaaaaactgcg
tattttatatttatgtcgaaaatctcgttgctcatacccgactttggtgtattggaggcg
gatggagagcagagagctgacaagaaaagtgctcaagattctgcagcattgcatctgctc
cttaaacttgaacagcaaggcaagcttataatcagctgttaa
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