Amaranthus tricolor (tampala): 130797603
Help
Entry
130797603 CDS
T09367
Name
(RefSeq) SWI/SNF complex subunit SWI3A isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130797603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130797603
03036 Chromosome and associated proteins [BR:
atri03036
]
130797603
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130797603
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130797603
PBAF complex
130797603
GBAF(ncBAF) complex
130797603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
OB_MEIOB_N
ZZ
Motif
Other DBs
NCBI-GeneID:
130797603
NCBI-ProteinID:
XP_057516236
LinkDB
All DBs
Position
13:complement(8345255..8351367)
Genome browser
AA seq
583 aa
AA seq
DB search
MENNLNSDRLPPSSFKPTSLPSHLDLYTIPSHSFWFSWDSIHDTERLELREFFDGSSFTR
TPKIYKEYRDFIISKYREDPSKRLTFTEVRKSLVGDVSTLNKLFNFLDKWGLINFGAPPP
PPVQPCVDESVKVRVEEGAPIGVRVVGTPNTLKPLKAPLSVSGDEGRVDNGFKLPPLASF
TDVFRDSGGENGVLCGNCKEKCESKYYECTKQEKFSICLKCFEKGAYGENKSADDFTLKD
SVESNANQAGWTEAETLLLVESVLKHGDDWELVAQNVHTKTKLECISRLIELPFGELMLG
SHGKLPVRDLVDDDDTSIEQKASIVSLENEKMEINQREGNQHEGNHLEDSNHLENNHDQE
NGHHHEIGEKDNGGNNDNLEPPLKKSRVDSLVPNRSLMEQVALISTMVAPPITAAAANAA
VTVLCDGNPLLREVFYTDDTSIDEQRSGNLNKEMERTLQSEDLEMKDASNSSEIEKLSPE
GDSIPLALRMRVAVGTALGAAAAHAKLLADHEEREIEQLMAFIIETQLKKVQRKAELFEV
LERMMEKEHALLEESKDDIIRQRITTLQTIFSEGISHQTDHYL
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggagaacaacttgaactcagatcgtctccctccttcttcttttaaacccacttctctt
ccctctcatcttgacctctacactatccccagtcactccttttggttttcatgggattct
attcacgatacagaaagacttgagcttcgagaattcttcgatggaagttcattcactcga
acccccaaaatctacaaagaatacagggattttattatttctaaatacagagaagatcct
tctaaaagactcacgtttaccgaggttcgtaaatctttagttggagatgtttctactctt
aataaactcttcaattttttggataaatggggtttgattaactttggtgctcctccaccc
cctcctgttcaaccatgtgttgacgagagtgtgaaagtgagagttgaagaaggggctccg
attggtgttcgggttgttggtactcctaatactttaaaaccattgaaggccccgctatcg
gtttcgggtgatgaaggaagggttgataatgggtttaagctgccaccgttggcttcattt
actgatgtttttcgcgattcgggaggagaaaatggggttttatgtgggaattgcaaggag
aaatgtgaatccaagtattatgaatgcacaaagcaggagaagttttcaatatgcttgaag
tgctttgagaaaggtgcatatggagaaaacaagtccgccgatgactttacgttgaaagat
agtgtagaaagcaatgctaatcaagcaggttggactgaagctgaaactcttcttcttgtg
gaatctgtcctgaagcacggagatgattgggaacttgttgctcaaaatgtgcatacaaag
actaaacttgaatgcatttcacggcttattgaattgccttttggggaactcatgttgggc
tcccatggaaagttgccggtgagggatcttgttgatgatgatgatacttctatagagcag
aaggcctcaattgtatcccttgagaatgaaaagatggagatcaaccaacgtgagggcaat
caacatgaaggcaatcatcttgaggacagcaatcacttagagaacaatcacgatcaggag
aatggtcatcatcatgaaattggtgaaaaggataatggtgggaacaatgacaacctagag
ccacctcttaagaaaagccgcgttgattctttagttcctaatagatctttaatggaacag
gtagctctcatttctaccatggttgcccctccaatcacagcggcagctgctaatgcggct
gtaacagttctatgtgatggaaaccccttgttgcgggaggttttctatacagatgatact
tccatagatgagcagagatcaggcaatctcaataaggaaatggaaaggactttgcaatcc
gaggatctagaaatgaaggacgcatccaattcttcagagattgaaaaattatcacctgaa
ggagattcaattcctctagccctacggatgagagtggctgttggtaccgcacttggagca
gctgctgctcatgcaaaactgttagctgatcacgaagaaagggaaatcgaacaattgatg
gccttcattattgagacccagttgaagaaagtccaacgcaaagcggaactctttgaagtt
ttagaacgtatgatggagaaggaacatgcattactagaagagtcgaaagatgatataatt
agacagaggatcaccacattgcaaacaatatttagtgaaggaatatcccatcagacagat
cattatctgtag
DBGET
integrated database retrieval system
