KEGG   Amaranthus tricolor (tampala): 130797614
Entry
130797614         CDS       T09367                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03018  RNA degradation
atri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130797614
  09123 Folding, sorting and degradation
   03018 RNA degradation
    130797614
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atri03019]
    130797614
   03041 Spliceosome [BR:atri03041]
    130797614
Messenger RNA biogenesis [BR:atri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     130797614
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     130797614
Spliceosome [BR:atri03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    130797614
 Complex C
  U2 snRNP components
    130797614
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 130797614
NCBI-ProteinID: XP_057516254
LinkDB
Position
13:3399871..3410508
AA seq 93 aa
MLFFSYFKEIVGREVVVELKNDLAIRGTLRSVDQYLNIKLENTRVVDQDRYPHMLSVRNC
FIRGSVVRYVQLPPDGVDVELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgctattcttttcatatttcaaggaaatcgtggggcgtgaagtggttgtggaactaaag
aacgatcttgctataagagggacccttcgttcagttgatcaatacctaaatattaagctg
gagaacactcgggttgttgatcaagacagatatcctcacatgttatctgtgaggaactgc
ttcataagaggatcagttgtgagatatgtccaattaccaccagatggagttgatgttgag
ttgctgcatgatgctacaagaagagaagctcgaggcggttaa

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