Amaranthus tricolor (tampala): 130797727
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Entry
130797727 CDS
T09367
Name
(RefSeq) RNA polymerase sigma factor sigC isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130797727
Transcription machinery [BR:
atri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
130797727
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
130797727
NCBI-ProteinID:
XP_057516428
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Position
13:9911832..9919287
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AA seq
549 aa
AA seq
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MGVSYELSVIRWGLPSLRSAFTPNLSPPCCSTSFRGKELDFGSPRFPHIAIGFDENETLH
KETLKMRACSSNPHTVENDYSNLEVNISKRSCKGLHNMIYDTRVLSNRDTSIYVRSIQAC
SASHFHVLMENVNVLEDGVSVSEKLERDIIVQLGRLGALKLFNACLSRTIDTMNLRADIT
EDKRANDNRPDDDLKKKVILSKRKEERKTRHEKRLQASSRRVVRITESSHEYSMHHEAAF
AAKKTKVRGRRAMLTKNEAEMSKGIKVVAQLEKVKATLEKETGRAVTLNCWAEAAGIDEK
VLQRDLRFGWYCRDKLLKSGRSLVFYLARYYRGLGIAYEDLIQAGNIGILQGAERFDHTR
GYQFSTYVQYWIRKAMSQLVSRHARGIKVPLTLGTTINRVHKARKALKRSRGKHPDDIEV
SKFTGLSLDKIKSADSCLRIVGSLDQKIGDFINMKYLECTPDTSIEVPERTVMKQHMRYD
IYKLLQELDPKERRILILRYGLGGHCMSLHEVGKIFDVSKEWIRRMEKRALTKLKTGEIQ
TTLRHYVDL
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaagttatgaattgagcgtgatcagatggggtctaccttctcttcgttctgct
ttcacccccaatttatctcctccttgttgttctacttcctttcgaggtaaagagcttgat
ttcggctcaccaaggtttccgcatatagctatcggctttgatgaaaatgaaacgttacac
aaggaaactttaaaaatgcgagcatgttcttctaatccacacaccgttgagaatgactac
tcgaacttggaggttaatatcagtaaaagatcttgcaaaggtttgcataatatgatctat
gatactcgagtattatccaatagagatacctcaatatatgttcgaagtatacaggcatgc
agtgcttctcattttcatgtactaatggagaatgttaatgtactggaggatggagtatct
gtttcggagaagctcgaaagagatattatagttcagttaggaagactgggagctctgaag
ctgtttaatgcatgtttatcgaggaccattgatacgatgaacttacgagctgatattact
gaagataaacgagcaaatgataatagaccagacgatgatttgaaaaaaaaagttatatta
tcgaagagaaaggaagagagaaaaacaagacacgagaagagattacaggcttccagtaga
agagttgtgcgcataacagaaagctcgcatgaatattctatgcatcacgaagcagccttt
gcggcaaagaaaacaaaggtgaggggcagaagagctatgctgaccaaaaatgaggctgaa
atgtctaaaggaattaaggtagttgcacaactagaaaaggtgaaagcaaccttggaaaag
gaaactgggagggcggtgacgttaaattgctgggctgaagcagctggtattgatgaaaag
gtgctgcagcgtgatttgcgctttggctggtattgcagagacaaactccttaaaagtggt
cgctctttagtgttttacttggcaagatattatcgaggactaggaatagcatatgaagat
ttaattcaggcagggaacataggaatattgcaaggtgcagaaaggtttgaccacacaagg
ggttatcaattctctacatatgtccaatactggatcagaaaagcgatgtcacagttggta
tctaggcatgcaagagggatcaaagttccgttaacattaggcaccacaattaaccgggta
cataaggctcgaaaagcccttaaaagaagtcgtggaaaacacccagatgatattgaagtt
tcaaaattcactggtctttctttggataaaataaaatcggcggacagttgcttgagaatc
gtgggttcactagatcagaaaattggagacttcataaatatgaaatatttggagtgcact
ccagatacctcaatagaggttcctgaaagaactgtaatgaagcagcatatgagatacgac
atatataagctcctccaagagctcgatccaaaagagagacggattctaattttaaggtat
ggattaggagggcattgtatgtcacttcatgaggtcggaaagatattcgacgtaagcaaa
gaatggatccgaagaatggagaagagggctctcactaaactaaagacgggagaaattcaa
acaactttaaggcattatgtggatttgtag
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