KEGG   Amaranthus tricolor (tampala): 130797857
Entry
130797857         CDS       T09367                                 
Name
(RefSeq) pre-mRNA-splicing factor SPF27 homolog
  KO
K12861  pre-mRNA-splicing factor SPF27
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130797857
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:atri03041]
    130797857
   03400 DNA repair and recombination proteins [BR:atri03400]
    130797857
Spliceosome [BR:atri03041]
 Complex B
  Other components
   Prp19 complex
    130797857
 Complex C
   Prp19-CDC5 complex
    130797857
DNA repair and recombination proteins [BR:atri03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    130797857
SSDB
Motif
Pfam: BCAS2 TrfA Med12-PQL HEPN_Swt1 Exonuc_VII_L TipAS
Other DBs
NCBI-GeneID: 130797857
NCBI-ProteinID: XP_057516627
LinkDB
Position
13:complement(8739703..8745329)
AA seq 255 aa
MGSKSGNGDILMLEAPIDAARPWASASNAETIDALPYIDDDYANPAVKQEVDRLVEEEMR
RSSKKPSDFLKDLPPLPKLNFQDHPMLAREYERVRAGKPPVPLDTSRYIPDAPSMNKHND
ETAWKQALQKAQRLLQHQEIRLENLDLISKYGPEVWKQYNQRLEASLTRLQAMATEHSEK
IETVNRERKYHQQNAGNELNVLSAQWRELCLKNIEIQEACAKNESQLEEYRNEAVERGWN
LDVSMENGSSVHVSY
NT seq 768 nt   +upstreamnt  +downstreamnt
atgggaagcaaaagcgggaatggcgatatcttgatgctggaggcgcccattgatgcagca
cgaccttgggccagtgcttccaatgctgagaccattgatgctttgccttacatcgacgac
gactatgctaatcctgcggttaagcaagaagtggatcgccttgtcgaggaagagatgcgc
cgaagttccaaaaaaccctctgatttcctcaaagatcttcctcctcttcccaaacttaat
tttcaggatcacccgatgcttgctagagaatatgaacgagttagggctgggaagccacca
gtgccactagatacttctcgctatataccagatgcaccatctatgaataaacataatgat
gaaacagcttggaagcaagcccttcaaaaagctcagcgcttgctacagcaccaagagata
aggctggaaaatttggacttaatttcgaagtacggccctgaagtttggaaacaatacaac
caacgacttgaggcttcattaacaagattgcaagctatggcgaccgaacacagtgagaag
attgaaacggttaacagggaaagaaaatatcatcagcaaaatgctggcaacgagttaaac
gttttatctgcacaatggagagagctttgtctaaagaatattgaaattcaagaagcttgt
gctaaaaatgaaagtcaacttgaagaatacagaaatgaagctgttgagagaggctggaac
ctggacgttagcatggagaatggttcctcagttcatgtgtcatactga

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