Amaranthus tricolor (tampala): 130797928
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Entry
130797928 CDS
T09367
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130797928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atri03041
]
130797928
03009 Ribosome biogenesis [BR:
atri03009
]
130797928
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130797928
Spliceosome [BR:
atri03041
]
Complex A
U2 snRNP components
U2 related factors
130797928
Complex B
130797928
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
130797928
Ribosome biogenesis [BR:
atri03009
]
Eukaryotic type
90S particles
Helicases
130797928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ResIII
ABC_tran
SRP54
T2SSE
AAA_30
PhoH
Flavi_DEAD
AAA_7
AAA_33
TsaE
Motif
Other DBs
NCBI-GeneID:
130797928
NCBI-ProteinID:
XP_057516707
LinkDB
All DBs
Position
13:complement(3626839..3632252)
Genome browser
AA seq
732 aa
AA seq
DB search
MGTERKRKVSLFDVVDDSNLNPGKLSKTNGSSGSIIMNNGTVNPSINRWNGRIYTPRFFE
ILEKRKSLPVWQQKEEFLQVLNNNQILILVGETGSGKTTQIPQFVIEAVELDSTDKRRKM
MVACTQPRRVAAMSVSRRVAEEMDVTLGEEVGYSIRFEDCSSAKTVLKYLTDGMLLREAM
TDPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQDYFNG
APLMKVPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACR
KINKEVANLGDQVGPVKVVPLYSTLPPAMQQKIFESAPPPLKEEGPPGRKIVVSTNIAET
SLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYT
EKSFHNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYL
GALDDEGNLTRLGEIMSEFPLDPQMGKMLVVSSEFNCSNEILSISAMLSVPNCFVRPREA
QKAADEAKARFGHIDGDHLTLLNVYHAYKQNQEDPNWCYENFVNQRALKAADNVRQQLVR
IMARFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLEKTGHYLTVKDNQVVHLHPSNC
LDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLANFPNCEAKRVLERLYKK
REKDREDSKNRR
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggggacagagagaaagaggaaggttagcttgttcgacgtggttgacgatagtaattta
aatcccggcaagctttctaaaaccaacggtagtagtggctcaataattatgaacaatgga
acggtcaatccttcgatcaatcgctggaatggaagaatttatactccgcggtttttcgaa
attttggaaaagcgaaaatctcttcctgtttggcagcaaaaagaggagtttttacaagtt
cttaataataatcagattcttatcttagttggtgaaactggtagtggtaaaactactcag
attccccaatttgtaatagaagcagtggaacttgatagtactgataaacggaggaaaatg
atggttgcttgtacccagcctcgtagagtggcagcgatgtcagtctcacgaagagttgca
gaggaaatggatgtgaccctgggagaagaagttggttacagcattcgttttgaggactgt
agtagtgcaaaaacagttctgaagtatctgacagatggtatgcttttgagagaagcgatg
acagatccgctcctggaaaggtataaagttataattctggacgaagctcatgaaaggaca
ttggctacagatgtgttatttgggcttttaaaggaagttttgaggaacagacctgactta
aagctggttgttatgagtgctacgcttgaggctgagaaattccaagattattttaatggt
gcacctctcatgaaagttcctggaaggctgcatcctgttgaaattttttacacccaggac
cctgagagagactaccttgaggctgctattcgaaccgttgtacaaatacatatgtgtgaa
cctcctggtgatatccttgttttccttactggagaggaggagattgaggatgcttgccgt
aaaattaataaagaagtggcaaatttgggtgaccaagttggccctgtgaaagttgttcca
ttatactctacccttcctcctgctatgcagcagaaaatatttgaatctgctccaccacca
ttaaaagaggaaggtcctcctgggaggaaaattgtggtgtctaccaacattgcagaaaca
tctttgacaattgatggtatagtttatgtgattgatccaggatttgccaaacagaaagtc
tataatcctcgagttcgtgttgagtcattgttggtgtctcctatatcaaaggcaagtgca
catcagagagctggtcgtgctggaagaacacagcctggtaaatgctttaggctgtacaca
gaaaaaagtttccacaatgatcttcagccacagacatatccagaaatactgcgatcaaac
cttgctaataccgtactcacactgaagaaattgggcattgatgacctagttcattttgac
tttatggaccctccagctccggaaacccttatgagagctttagaagtgctgaattatctt
ggtgcactggatgatgagggtaatctgactaggcttggagagatcatgagcgaatttccg
ctggatcctcagatgggaaagatgctagttgttagctctgagttcaactgttcaaatgaa
atcctttcaatatcagcaatgctttcagtacccaattgctttgtgaggcctagggaggcc
cagaaagctgcagatgaagcaaaagctaggtttggacacattgacggggatcacctcact
ttgttgaacgtatatcatgcctacaagcagaatcaggaggatccaaactggtgttatgag
aattttgtaaaccagagggcgttgaaggctgctgataatgtgaggcagcaacttgtgcgc
attatggccagattcaacctgaagttgtgcagtacggatttcaatagcagggactactat
gtcaacatacggaaagcaatgctagcaggttattttatgcaagtagcgcatctggaaaaa
acaggacactatttgacagtgaaagataaccaagtggttcacttgcatccttcaaactgc
ctggaccataaaccagagtgggttatatacaatgaatatgtgttgacgagccggaatttt
attcgtactgttactgatatccgaggagaatggcttgttgatatagcaccacactactat
gatcttgcaaacttccccaactgcgaagcaaaacgggttttagagaggctctacaagaag
cgtgagaaggacagagaagatagtaagaacaggagatag
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