Amaranthus tricolor (tampala): 130798259
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Entry
130798259 CDS
T09367
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atri03400
]
130798259
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
130798259
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
130798259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
DEXQc_Suv3
DUF5087
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130798259
NCBI-ProteinID:
XP_057517156
LinkDB
All DBs
Position
13:complement(5195353..5234652)
Genome browser
AA seq
2088 aa
AA seq
DB search
MVLQLPRLTNSLRDPFDIDRAYLHRKTILLNLNPPSKPNSLDESELARKIVYNWEEASPE
VRQTYKLFIGAIFELINGEVVSEEFHEVALTAYRLFSDQGVEQDSRRITEKKSDLQKLLG
RAVSDGSLQKVVQLAQRLGSLQPRINTTQNFDENLNDHDVEFGFNLDFKPPSRFLLEIPL
EEEVLEMENLVPSTSIYNDWSSADTIDNSFANGGIRYDLKWLKESCDLIVRGSGSELSRD
ELAMTICWILDSDKPGEEIAGDLLDLVGDGAFETVQELILHRKQLVEAIHHGLLVLRSDK
SSSNAQPRMPSYGTQVTVQTESEKQIDKLRRKEEKRHKRGVDHGIEDDFSCTSFSSLLEA
SERKNLFDDVIGTGPGPQSLTISALPQGTVRKHFKGYEEVIIPPIPTAPMKPGEKLIEIK
ELDDFAQAAFHGYKSLNRIQSRIFQTVYHTNENILVCAPTGAGKTNIAMISILHEIGQHF
KDGYLHKNEFKIVYVAPMKALAAEVTATFSHRLAPLNMTVKELTGDMQLSKNELEVTQMI
VTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESSQSMI
RIVGLSATLPNYLEVAQFLRVNPESGLFFFDSSYRPVPLAQQYIGISEKNFLARTELLNK
ICYYKVVDSLRQGHQVMVFVHSRKDTGKTADRLVELAREDNSLELFQNETHPQFQLIRKE
VMKSRNKELVGLFDYGFGIHHAGMLRSDRGLTERLFSDGLLKVLVCTATLAWGVNLPAHT
VVIKGTQIYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAHYLRLLTS
QLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIGWEEVVA
DPSLGLKQRSFITDAACALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEML
RRHMSDSEVINMVAHSSEFENIVVREEEQMELEALARECPLEIKGGPSSKHGKISILIQL
YISRGSIEGFSLISDAAYISASLARIMRALFEICLRRGWSEMSAFMLEYCKAVDRQIWPH
QHPLRQFDREISLEILRKLEDRGADLDRLYDMEEKDIGALIRYLPGGKVVKQYLAFFPMV
QLSATVSPITRTVLKVDLLITPDFIWKDRFHGAVQRWWILVEDSENDHIYHSELFTLSKR
SAKGEPQKLSFTVPIFEPHPPQYYIRAVSDSWLQSESFYTISLHNLALPEAHSSHTELLD
LKPLPITALGNGTYESLYNFSHFNPIQTQAFHVLYHTDNNVLLGAPTGSGKTISAELAMF
RLFNTQPDMKVIYIAPLKALVRERVNDWRRRLVTQLGKEMVEMTGDYTPDFMALLSADII
ISTPEKWDGISRNWHTRSYVKKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERSV
RFVGLSTALANAGDLADWLGVGELGLYNFKPSVRPVPLEVHIQGYPGKYYCPRMNSMNKP
AYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQYAASDEHPRKFLNISEDALQMILSQVT
DQNLRHTLQFGIGLHHAGLNDKDRSAVEELFGNNKIQVLVSTSTLAWGVNLPAHLVIIKG
TEYYDGKSKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVE
SSLREQLHNHFNAEIVSGTIGHKEDAIHYLTWTYLYRRLVVNPAYYGLEDTNPAILSSYM
SRLVQSTFEDLEDSGCIKVIEDAVEPMMLGSIASQYYLSYLTVSMFGSNLGPNLSLEVLL
HILSAASEYDELPVRHNEENYNATMTEKVPYKVDINRLDDPHIKTNLLFQAHFSQLEMPI
SDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSTITCMHLMQMVMQGLWFDKDSALQMLP
CLNNNIIGTLRRQGISNVQHLLNVPRASLQNLLGNFPASTLYQDLQKFPCVHIKLRLKKK
DESASSPYSLNVRLENANGKRKTPRAFAPRFPKVKDEAWWLVLGNTITSELYALKRVSFA
DHLVTHIDLPSHSVTSQDLKLILVSDCYLGYELEYSLEELLKGQLQDF
NT seq
6267 nt
NT seq
+upstream
nt +downstream
nt
atggtgctccaacttcctcgactcaccaactccctcagagaccctttcgatattgaccgt
gcttatcttcatcgcaaaactatccttctaaacctcaatcctcctagcaagcccaattct
ctcgatgaatcagaattagcgaggaagattgtgtataattgggaagaagcttctcctgaa
gtgcgacaaacatacaaactgtttatcggtgcgatttttgagttgattaatggagaggtt
gtgtctgaggagtttcatgaagtggcgctgactgcgtatcgactctttagtgatcaagga
gtggagcaagatagcagaaggattactgagaagaagtcagatttacaaaaactgctgggt
cgtgctgtttcagatggtagccttcagaaagttgtgcagttggctcagagattgggtagt
ttgcaacctagaattaacacaacacaaaattttgatgaaaatctgaatgatcatgatgtt
gaatttggatttaaccttgattttaaacctccttcacggtttttattggaaattcctttg
gaagaggaggttttggagatggagaatttggttccatcaacttcaatttacaatgattgg
tcttcagctgatacaattgacaatagttttgccaatggtggaatcaggtatgatttaaaa
tggttaaaagagtcctgtgatctaatagtgcgtggaagtggttcggaactttcccgagat
gaactggccatgaccatttgctggattcttgattctgacaaacctggggaagagattgcg
ggtgatttactggatcttgtgggggatggtgcttttgaaactgtgcaggagcttatcttg
cacaggaagcagctcgttgaagcaattcatcatggcttgcttgtattacgatcggataaa
tcatcttcaaatgctcaacctcgcatgcccagttatggcacacaggtcactgtgcaaacc
gagtctgagaagcaaattgataaacttaggcgcaaagaggaaaaacgccacaaacgcggt
gtagatcatgggattgaagatgacttttcttgtacaagcttttcttccttacttgaagca
agtgagaggaagaatcttttcgatgatgtgattggaactggaccagggcctcagtcattg
acaatttccgcactaccacaaggaactgtaagaaagcattttaaaggctatgaagaagtt
ataattcctccaataccaacagctccaatgaaacctggtgaaaaactgatagagataaaa
gaattagatgattttgctcaagctgcttttcatgggtacaaatccctcaaccgtatccag
agtaggatctttcagacagtttaccacactaatgagaatatattagtttgcgcaccaact
ggagctggtaaaacaaatatagctatgatttctattctgcatgagattggacaacatttc
aaggatggttacctgcacaaaaatgagtttaaaattgtttatgttgctccaatgaaggca
ttagctgctgaagtcacagcgacgtttagtcatcggttagctccattgaatatgaccgta
aaagagctaacaggagatatgcaactttctaagaatgaacttgaagtaactcagatgata
gtgactacacctgaaaaatgggatgtcatcacacgcaagagtagtgacatgtcactttcg
atgctcgttaaactgttaataattgatgaagtgcaccttttgaatgatgatagaggtcct
gtcatagaagcattagttgctcgtactcttcgtcaagttgagtcatctcaatccatgatc
cgcattgtaggtctatcagctacattgccaaattatttggaggtggcacaatttttgagg
gtgaatccagaatccgggctctttttctttgattctagctatcgtcctgtccctcttgca
caacagtacattggtattagtgagaaaaactttttggcccgtactgagttgctgaacaag
atttgctactacaaggtagttgattccttgaggcaaggtcaccaagtaatggtatttgtt
cattcacgcaaagatactgggaaaactgcagatagactggttgagcttgcccgagaggac
aacagtttggagcttttccagaatgagacacatccacagtttcaattgataaggaaggag
gtcatgaagtctagaaacaaagaattagttggactctttgattacggttttggtattcat
catgctggaatgttacgttctgataggggtcttactgaacgacttttctctgacggattg
ctgaaggtgcttgtttgcacggcaactttggcatggggagttaacttacctgctcatact
gttgtaatcaagggtacacagatatacgatcctaaggctggtggttggcgggatttgggc
atgcttgacgttatgcagatctttggacgtgctgggagacctcagtttgacaagagtggt
gagggcattatcatcacatctcatgacaaattagctcattacctacggcttcttaccagc
caacttcctattgaaagtcagttcatcagctccttgaaagataatctgaatgctgaggtc
gcactgggtactgtcacaaatgtgaaagaagcttgtgcttggcttggttatacctatcta
tttatcaggatgaagatgaaccccttggcatatggaattggatgggaggaggtggttgcg
gatccttctttgggtttaaaacaaagatcttttataactgatgctgcttgtgcccttgat
aaagcaaagatgatgcgttttgatgagaaaagtggaaacttctactgtacggagctaggt
cgtattgcaagccatttttatatacaatattctagtgtggaaacttacaacgaaatgtta
aggcgacatatgagtgatagtgaggttattaacatggttgcacattcttctgagttcgaa
aatattgttgttagagaagaggagcaaatggaattggaagctttggcacgtgaatgccct
cttgaaatcaaaggtggtccctccagtaaacacgggaaaatttctattctcattcagcta
tacatatcacgaggatctatagaggggttttcattgatatctgatgctgcttatattagt
gcaagtttggcccgtatcatgcgtgctctgtttgagatttgtctgcggagaggatggtca
gagatgtcagcttttatgttagaatactgcaaggctgttgaccgacaaatttggccccat
cagcatccactgagacaatttgacagagaaatctctttagagattttgaggaagctggaa
gatcgaggggctgatctcgatcgcctctatgatatggaggagaaagatattggagctttg
attcgttatttacctggagggaaggttgtgaagcaatatttggcatttttcccaatggtt
cagttgtcggctactgtcagtcctataacaagaactgttttaaaggttgatcttcttata
accccggatttcatatggaaggatcgtttccatggtgctgttcagcgatggtggattctt
gttgaggattctgagaatgaccacatttatcactcagagctcttcacgctgtcaaagcgt
tcagcaaaaggagagccccaaaagctttcttttactgtgccaatatttgagccacatccg
ccacagtactatatacgtgccgtttctgattcttggttgcaatctgaatccttttatact
atctcccttcacaatctcgcattgcctgaggctcactcttctcacactgaattgcttgat
ttgaaacctctaccaataactgcactcggcaacggaacttacgaatccttgtacaacttt
tcacatttcaatccaattcagacacaggcttttcatgttctgtatcacacagacaacaac
gtgctcttaggagcacctactggaagtgggaaaactatatcagctgagcttgcaatgttc
cgccttttcaacactcagcctgatatgaaggttatttacatagcccctctgaaggccctt
gtccgagaaagagtgaatgactggagaagacggcttgtcactcagctgggaaaagagatg
gttgaaatgactggggattatactcctgactttatggcccttttgtcagcagatatcatc
atttccactcctgaaaagtgggatgggatcagccgtaactggcacactcgaagctatgtt
aaaaaggttggccttatgattttagatgagattcacctgctcggagctgatagaggacca
attcttgaggttattgtctcaaggatgagatatatatcatcacaaacggaacgttcagtg
cgatttgtgggactgtctacagctctagcaaatgcaggggatttagctgactggctgggc
gttggtgaattgggactctacaatttcaagcctagtgtgcgacctgtaccacttgaagta
catattcagggataccctgggaagtattattgtccaaggatgaatagcatgaacaaacct
gcatatgctgctatctgtacacattcacctacaaagccagttcttatatttgtttcatca
cgtcgacaaacaagactaacagctttggacctaattcagtatgctgcatctgatgagcat
ccaagaaagttcttgaatatatcagaagacgcactgcagatgattctttcccaggttaca
gatcaaaatctgaggcacaccttgcagtttggaattggtttgcatcatgctggtttaaat
gacaaggatcgatctgcagttgaagaactgtttggaaacaacaagattcaggtattagta
tccacgagcacgttggcctggggtgtgaatcttcctgctcatcttgttattatcaaggga
acagaatattatgatgggaaatcaaaaagatatgttgattttcctataacagatatcttg
caaatgatgggtcgtgcaggtcgacctcaatatgaccagcatggaaaagcagttatcttg
gttcatgagcccaaaaagagtttctacaaaaagttcctttacgagccctttccagttgag
agtagtctcagggaacaattgcataatcactttaatgcagaaattgtgtcaggcacaatt
ggccacaaggaagatgccatccactacttgacttggacttatttgtacagaagactagtg
gttaatccagcttactatggtttggaagataccaatccagcgattctaagctcatacatg
tctaggttggtgcaaagcacatttgaagatttagaagacagtggatgcatcaaagtaatt
gaggatgctgtagaaccaatgatgttgggttcaattgcatcacaatattaccttagttat
ttgactgtatcaatgtttggttcaaaccttggaccaaacctttcacttgaagttttgttg
catattttatctgctgcttcagaatatgatgaactcccagtgcggcataatgaggaaaac
tacaatgcaacaatgactgagaaggttccatacaaggtggatattaatcgtcttgatgat
cctcacattaaaacaaatttgctttttcaggcgcacttttctcagttagagatgccaatc
agtgactatgtgacagacctgaagtctgttttggaccagagtatacgtataatccaggct
atgatagacatctgcgctaacagtggatggctttctagcacaattacttgtatgcatcta
atgcagatggtcatgcagggcttatggtttgacaaggattctgctctgcaaatgttacca
tgcttgaacaacaatataattggtacactcaggaggcaaggtatatcaaatgtgcagcac
ttattgaatgttcctagggcaagtttgcagaatctacttggaaacttccctgcttcaact
ttatatcaggacttgcaaaaattcccttgcgtacacatcaaactgagacttaagaaaaag
gatgagagtgcaagcagtccttactctcttaatgtgagattggaaaatgccaatggcaaa
cggaagacacctagagcatttgctcctcgatttcctaaggttaaagatgaagcgtggtgg
cttgtgctcggaaatactatcacttctgagttatatgcattgaagagagtttcatttgct
gaccatttggttacgcacattgacttaccatcacattcagttactagccaggatttgaag
ctcatcttggtctcagattgttatcttggttatgaactagaatactccttggaagaactt
ctcaaaggtcaactgcaagatttctaa
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integrated database retrieval system
