Amaranthus tricolor (tampala): 130798387
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Entry
130798387 CDS
T09367
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03030
DNA replication
atri03420
Nucleotide excision repair
atri03430
Mismatch repair
atri03440
Homologous recombination
atri03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130798387
03420 Nucleotide excision repair
130798387
03430 Mismatch repair
130798387
03440 Homologous recombination
130798387
03460 Fanconi anemia pathway
130798387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
atri03000
]
130798387
03032 DNA replication proteins [BR:
atri03032
]
130798387
03400 DNA repair and recombination proteins [BR:
atri03400
]
130798387
Transcription factors [BR:
atri03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130798387
DNA replication proteins [BR:
atri03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
130798387
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
130798387
MMR (mismatch excision repair)
130798387
DSBR (double strand breaks repair)
HR (homologous recombination)
130798387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RMI1_C
Rhabdo_glycop_CD
Motif
Other DBs
NCBI-GeneID:
130798387
NCBI-ProteinID:
XP_057517319
LinkDB
All DBs
Position
13:5379139..5383202
Genome browser
AA seq
622 aa
AA seq
DB search
MEAMTVTPDAISKILANPSPDSCVDLPDLVIQVIDLKSVGNRFMFTAFDGKQKLKGILQS
SFSDLVSSGSIQNLGLIRILDYTLNDIPNKPEKYLLVAKCEAVSPALEAEVKIEESSVVL
KPHKDLNVKTEVKIEDSGILLKPKLEIAKSAAQIIHEQRGNEAPVSRMAMTRRVHPLASL
NPYQGNWTIKVRATSKGNLRSFRNARGEGNVFNVELTDEDGTQIQATMFNEAATKFFDKF
QVGKVYYISKGTLKVANKQFKTVQNDYEMTLNDNSIIEEATDEGVFIPETNFNFIPIDQL
GIHVNAKDVVDVIGVVKHVSETMSIRRKINNEMIPKRDITIADESKKTVVVSLWNDHATT
VGQELLDMADKSPVIAIKSVKVGDFQGVSLSAISKSIVKINPDIPESKKLKSWYESEGKE
TSMASVGAGMTPSTSGGRSMYTDRVSISHITSNPSLGEDKPVFFNIKACISLIKADQTLW
YRACKTCNKKVTEAIGSGYWCEGCQKNDAGCNLRYVLNAKISDGSGEAWVSTFNDQAEKL
IGCSADELDKLKSQEEEGNEYQMKLKEATWAPYTLRVSVAQNEYMNEKRQRITVRAVAPL
NYAAETSFLLAEISKLKACRTQ
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggaggccatgactgtaaccccagatgccatttccaagattttagcaaacccatctccg
gattcatgtgttgatcttcctgatcttgttattcaagttattgatttgaagtctgttggt
aaccgtttcatgtttactgcatttgatggaaaacaaaagcttaaaggaattcttcaatca
agtttttcagatttggtgtcttctggatccattcagaatctgggtcttattcgaattctc
gattacacactcaatgacatcccaaataagccagaaaagtatctgcttgtagctaagtgt
gaagccgtatcgcctgcccttgaggcggaggtgaaaattgaggagtctagtgttgtgtta
aagccacataaagatcttaatgtgaaaaccgaggtcaaaattgaagattctggaattttg
ttaaagcctaagctggaaatcgctaaatcagctgctcagatcattcatgagcaacgcgga
aatgaagcacctgtgtcaagaatggctatgactcgtagagttcaccctctagcttctttg
aacccctaccaagggaactggaccattaaggttcgagccacgagcaaggggaacttgaga
agctttaggaatgctagaggagaggggaatgtcttcaatgttgagttaaccgatgaagat
ggtactcaaatacaagcaacaatgtttaatgaagctgctacaaagttctttgacaagttt
caagtagggaaagtatactacatttcaaagggaacattgaaagttgcaaacaagcagttt
aagacagtacaaaatgactatgagatgacccttaatgataattctattattgaggaagct
actgatgaaggagtatttattcccgaaacaaatttcaactttattccaattgatcagttg
ggtatacatgtaaatgcaaaggatgttgtagatgtaattggagttgtcaaacatgtgtct
gagacgatgagtatcaggaggaagatcaataacgagatgattccaaagcgggatatcact
attgctgatgaatcgaagaaaactgttgtggtttctttgtggaatgatcatgccactaca
gttggacaggaattgttggatatggctgataagtctcccgtaattgccattaagtctgtc
aaagtcggagattttcagggtgtttcattgtcggcaataagcaaatctatagtaaagatt
aatcctgatattcccgaatcaaagaagctaaagtcttggtatgaatctgaaggtaaagaa
acttcaatggcttctgtgggtgctggtatgaccccttctactagtggcggaaggtcaatg
tacaccgacagagtctcgatttcacatatcacaagcaacccatctctgggagaggacaag
cctgtattcttcaacataaaagcttgtataagcttgattaaggctgatcaaacgctgtgg
taccgggcctgtaaaacgtgcaacaagaaggtaactgaagctattggatccggctactgg
tgtgaaggatgccaaaagaatgatgcaggatgcaacttaagatatgttttgaatgcaaag
atatcggatggtagtggggaagcatgggtttcaacattcaatgatcaagctgagaaactt
attgggtgttcagctgatgagcttgataagctgaaatcacaagaggaagaaggaaatgag
taccaaatgaagctaaaagaagcaacttgggcaccttacaccttacgagtaagcgttgca
caaaacgagtacatgaacgagaaaagacaaaggattactgtaagagctgttgcaccactt
aattatgcagctgaaactagttttctgctagccgagatctcgaaactgaaagcctgccgg
acccagtaa
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