Amaranthus tricolor (tampala): 130799172
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Entry
130799172 CDS
T09367
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03013
Nucleocytoplasmic transport
atri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130799172
03015 mRNA surveillance pathway
130799172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130799172
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130799172
5.6.2.5 RNA 5'-3' helicase
130799172
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130799172
mRNA cycle factors
Common to processing body (P body) and stress granule
130799172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
DEAD
Helicase_RecD
NPHP3_N
nSTAND3
PIF1
PhoH
ATPase
AAA_16
SRP54
AAA_22
Ribosomal_S13_N
AAA_25
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
130799172
NCBI-ProteinID:
XP_057518254
LinkDB
All DBs
Position
14:complement(12406619..12421933)
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AA seq
1282 aa
AA seq
DB search
MDSSTNNLFETASQPDTGNDDAYTFLEFNTQGVDAEDDDDFSYPQFNELSQPIRSSSSSS
AFILPTPSESTVGGLADIKDSSSPRKQQQSPSEAPTKTGLRSGVALAVDALAAGMSGLNF
EETAGDEDGFVDQFGKGIGDFTEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSH
IVSHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKSESVVVLLCREPCLS
VNALKDMNWDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEELWKTNPDA
SLEDLEKPGVDDEPQQVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNLTVRWDI
GLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELR
TSQGVPVDINHGFSVDFVWKSTSFDRMQNAMKTFAVDETSVSGYIYHHLLGHEVEMHVVR
NTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQ
VLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSEL
HKLQQLKDEQGELSSSDEKKYKALKRATEREIAQSADVICCTCVGAGDPRLANFRFRQVL
IDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLNVK
PIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQ
EEISASGTSYLNRTEAANVEKIVTSFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALR
QQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILG
NPKVLSKQPLWNGLLTHYKEHECLVEGPLSNLKQSMVQFQKPKKIYNDRRLFYSAAASTV
PNDNFVPVTTIGPNGDRRGSRARGYMPPGAPNGTHKPAVHPAGFPLGRVPLPPYHGAPPS
QPYAIPSRGAVHGPVGAVPQVPQPGSRGFGAGRGSAAPIGSHLPHQQASQQPVGSLGPNY
IFPLESPNGQQSGGGPLSQPGFVSNMSVQGACQSFRDGFSMGGMSQDFLGDDFKSQGSHV
PYNIAEFSTQASQTGYTVDYATQGGQTTFPGSFLNQNSQAGYSRFGSGSDFLSQEYVAHG
SQGLFTQVGFNDQSQDDNSQGQFDVGNANSLQSQTLINPLYSQPFTHYNTRPVNLSNAQS
QPKQQPAQQGLSSQNQKAHFSG
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atggattcatcaacgaataatctcttcgaaacagcatcgcaaccggatacaggaaacgac
gatgcatacacttttctcgaattcaacactcaaggtgtagatgcagaagatgacgatgat
ttctcttatcctcaattcaacgaactttctcaaccaattcgttcttcttcttcttcttcc
gcttttattttgcctactccttccgagtccactgttgggggcctcgctgatatcaaggat
tcatcttctccaagaaaacagcaacaatcaccttctgaagctccaacgaaaactggtctt
cgaagtggagtggctttggctgtcgatgcattggcggcagggatgagtgggttgaatttt
gaggagactgctggtgatgaagatgggtttgttgatcaatttgggaaaggtattggggat
ttcactgagcatgcttgtaggtattgtggtgttcagaatcctgcttgtgttgtgaggtgt
aatgttccgtcttgtcgtaagtggttttgtaattctagagggaatacttctggttctcat
atcgtcagtcatcttgttagagcaaagcacaaagaagtttgtttacataaagatagtcca
ttaggagaaacaattcttgagtgttacaactgtggttgccgtaatgttttcctacttggg
tttatttctgcaaagtcagagagtgtagtcgttcttctgtgtagggaaccttgtttgagt
gtcaatgctctgaaggacatgaactgggatttgagtcaatggtgccctcttattgatgat
cgctgttttcttccctggcttgtcaaggttccatctgaacaagagcaactgcgggccaga
cagataagcgcacaacaaataaataagatagaagagctttggaaaactaatcctgatgca
tctttggaggatcttgaaaaacctggtgttgatgatgaacctcagcaagttgctttgaaa
tatgaagatgcttaccagtatcaaaatgtatttgctccgctcatcaaacttgaagctgat
tatgataagatgatgaaagaatctcaaagtaaggataatttgacagtgcggtgggatatt
ggtcttaataagaagcgcattgcatattttgttttcccaaaggaggataatgagttgcgt
cttgtacctggtgatgaattgcggctacgttattcaggagatgctgcccatcctgcatgg
cagtcagttggtcatgtgatcaagttaactgcacaagaggaggttgctcttgagctccgc
acaagtcagggagttccagttgacataaatcatggtttcagcgttgattttgtttggaag
agtacaagctttgatcggatgcaaaatgctatgaaaacatttgcagtggatgagactagt
gttagtgggtatatttatcaccatttgctggggcatgaagttgagatgcacgttgttcgt
aatactttgcctcgtcgatttggtgctccaggccttccagagcttaacgcatcccaggtt
ttcgctgtaaagagtgtccttcaaaagcccataagtttgatccaaggaccccctggcact
ggaaaaactgtaacatctgctgctattgtatatcacatggccaaacaaggtcagggacag
gtattggtctgtgcaccaagtaacgtggctgtggatcaattggctgaaaagataagtgct
actggtttgaaggttgttagactctgtgcaaagtcaagagaggccgtcagttctcctgtt
gaacatcttactcttcactatcaggttcggcaccttgacacatcagagaagagtgagctt
cataagttacaacaactaaaggatgaacaaggagaattgtcaagcagtgatgagaagaag
tacaaagcactgaagagagcaacagagagggagatagctcaaagtgctgatgttatatgt
tgcacttgtgttggagctggtgatcctcgcctagcaaattttagattccgtcaggtgctt
attgatgagtctacccaagcgacagaaccagaatgtctcataccgctggttcttggagca
aagcaggtggttcttgttggtgaccactgtcaacttggtccggtgattatgtgcaaaaaa
gctgctcgagctggattggctcagtctctttttgaacgccttgtgttacttaatgtgaaa
cccatcaggctacaggttcaatatcgtatgcatccagctctctcagagtttccttccaat
agtttctatgaaggtactctccagaatggtgtgacaatcaatgaaagacaatcatcagga
attgattttccttggccagtaccaaaccgtccaatgttcttctatgtccagatggggcaa
gaggagataagtgcgagtggaacatcctaccttaaccgcactgaggctgcaaatgttgag
aaaatagtgacttctttcttaaggagtggtgttgttcctagtcagattggggttatcaca
ccttatgaaggacaaagggcttacatagtgaactatatgtcaaggaatggtgctctgagg
cagcaactttataaggaaattgaggtggctagtgttgattcatttcaaggaagagagaag
gattacattattttatcttgtgttaggagtaatgaacatcagggtattggttttctcaat
gatcctcgtaggcttaacgttgcactgacacgtgcccgttatggaattgtcatcttgggg
aatccaaaagttttgagcaagcagccactctggaatggcttattgactcattataaggag
catgagtgcttggttgaaggacctctgagtaacttgaagcaaagtatggttcaatttcag
aaacccaaaaagatttataatgatcgaagacttttctatagtgcagcggccagcactgtg
ccgaatgataattttgtaccagttacaactattggtccaaatggtgacaggcgaggcagt
cgggctagaggttatatgccacctggagcgccgaacggtactcacaagccagcagtgcat
cctgcaggattccctcttggccgtgttcctcttcctccttatcatggtgcaccaccatca
cagccatatgccatcccttcgcgtggtgcagtacatggtcctgttggagcagttcctcaa
gtacctcagcctggaagccgtggtttcggtgctggtcgtggcagtgctgcccctattggc
agtcatctaccgcaccagcaagcttcacagcaacctgtagggagtcttgggcctaattac
atctttcctttggagagtccaaatggccaacaatctgggggtggtccattgtcgcaacct
ggttttgtttctaatatgtctgttcaaggagcttgccaatctttccgtgatggattttca
atggggggcatgtcacaggacttcttgggcgatgatttcaagagtcaaggatcacatgtt
ccttacaatattgcagaattctcaacacaggcttcacaaactggatatactgtggattat
gctacacaaggcggacagactaccttccctggaagcttcttgaaccagaactctcaagct
ggatactctcgttttggtagtgggagtgactttttgtctcaggaatatgtggctcatgga
tcccaaggtcttttcactcaagttggcttcaatgatcaatctcaggatgacaattcacag
ggtcagttcgatgttggaaatgcgaactctcttcaatcacagaccttgataaatcctttg
tattcccaaccgttcacgcattacaacactcggcccgtgaatttgtcgaatgctcagtct
cagcctaaacagcagcctgctcagcagggtcttagctcacagaaccagaaagctcatttc
agtggttga
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integrated database retrieval system
