Amaranthus tricolor (tampala): 130799298
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Entry
130799298 CDS
T09367
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130799298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atri03400
]
130799298
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
130799298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
130799298
NCBI-ProteinID:
XP_057518383
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Position
14:complement(11636290..11641513)
Genome browser
AA seq
1084 aa
AA seq
DB search
MDYMPIGRRTRLQKSLNEKRFRKEYSRSDSKVKIDEKHVSISGFSLSKDEEEEECLMIDE
TEFVNGISARKLEKNSPSKIVGNKNNADLGRFHDGFNENFEGFEDKGKKAHDDDNVAYLD
DDDNDDGEMNKGISDDDEKVKGKRIIQSDDDGDADGGDDGKMREVISDEDKEIKGKRIMN
DDSNDNANVDCDVHDADDDEEEEEERRSKEVEFKRRMFEGMYVPVYLNNNSYQNSFIGQR
TRSRCKYSNPKKKANDGTFSHPINIDLESSSTSSSSDDDHGDDDVDDDDNDDDFKPKSHQ
GEKRKRGRPPLKKSKEKEVSKKKQGLKRQITSEVLDTLLNATLEDYNKGSEDLLDCFSKL
LIPLNFRYGVQKSEQKNAEQEINEEAEFLFKEMEMEEEQDEDYLFCNIGLEASIVNDRGD
EDEHDVPCNSAKMHESLCLKGKHCWILDEEIGMKCKICSFVKLEIRHVMPDFNENPFGPR
KDNRNNGSWNDISATYESHKFMFPERHDDQSNDDSPLNDTFETVWDLVPAETKKTLYPHQ
KEGIELIWRTTCGGIRIDELATELTKPGVGGCIICHAPGTGKTRLAIVFLQSFMKKYPNS
KPVIIAPCSMLQTWEEEFARWNVDVPFFNVNNKELSEKENNLMRKCGLQKLNLKDEKLVR
VAKIGCWSTGKGVLGISYRLFQRLASDNGKEKEQNENIRELLLEKPDILVLDEGHTPRND
KSKSLNVLSQVATKRRVILSGTPFQNNLEEFKNTISLVREDFGYLSSEFSCSYLSDRRIE
KLKKRMKDFVHVYSGAILKETLLPLFHSVIFLRPSNLQKLFFSAIRSRYKFIENDYLTSV
ASVHPSIFCGKKLHSSVDQEWKDLLEKHRTDIRAGVKLQFLVELINLCKGERVLVFAQYL
PPLNFIEDFLKFCFDWTRGREIVYIDGEQDMKERHSSIKLFNDPMSDARVLLASTKACCE
GINLVGASRVVLLDVVWNPSVERQAISRAYRIGQKRNVFVYHLISLGTVEEEKYRRKAMK
ARLSERLFFSCSPDGEAMHKKSAVSEDCILKAMIHHEKTRNMFENIISQPRADDLVQSFS
LLNF
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atggattatatgccaattgggaggagaacaaggcttcaaaaatctttaaacgagaagaga
tttcggaaggaatattctagaagcgattctaaggtgaaaatagatgaaaaacatgtttct
atatctgggttttctttgagtaaggatgaggaagaagaagagtgtttaatgattgatgaa
actgagtttgttaacggaatatctgctcgtaaacttgaaaagaattccccctcaaaaatt
gtgggtaataagaataatgctgatttgggtaggttccatgatgggtttaatgaaaatttt
gagggttttgaagacaagggtaaaaaagctcatgatgatgataatgtagcttaccttgat
gatgatgataatgatgacggagagatgaataagggtatttctgatgatgatgagaaagtt
aagggtaagagaattatacaaagtgatgatgatggtgatgctgatggtggtgatgatggg
aaaatgagagaggttatttctgatgaggataaagaaattaaggggaagagaattatgaat
gatgatagcaatgacaatgctaatgttgattgtgatgttcatgatgcagatgatgatgag
gaggaggaggaggagaggagatcaaaggaagttgaattcaaacggagaatgtttgagggt
atgtatgttccagtataccttaacaacaattcttatcagaacagctttataggacaaaga
acaaggtctcgttgcaagtatagtaacccaaagaagaaagccaatgatggaacctttagt
caccccattaacattgatctagaatcatcatcaacatcttcatcctctgatgatgatcat
ggtgatgatgatgttgatgatgatgataatgatgatgattttaagcccaagagtcatcaa
ggggagaagagaaaacggggcagacctccattgaagaagagcaaagaaaaggaggtatct
aagaagaaacaaggactaaagaggcaaataacaagtgaagttctagatacattgcttaat
gcaactttggaggattataataaagggtcagaagatcttttggattgttttagtaagcta
ctcattccattgaactttagatatggtgtacagaaatcagaacagaaaaatgcagaacag
gaaataaatgaagaagcagaatttctcttcaaggaaatggagatggaagaggaacaggat
gaagactatctgttttgtaatattggtttagaagcttctatcgtgaatgaccgaggtgat
gaagatgaacatgacgttccttgtaatagcgcgaagatgcatgaaagcctttgccttaaa
ggaaagcactgctggattcttgacgaggagattggaatgaagtgtaagatctgctcattt
gttaagcttgagattcgacatgtcatgcctgattttaacgagaatccattcggtccacga
aaagataacagaaacaacggctcctggaatgatatcagtgccacatatgagtctcataaa
tttatgtttcctgaaagacatgatgatcaaagcaatgatgatagtcctttgaatgacact
ttcgaaacagtttgggatctggtacctgcagagacaaaaaagacattgtatcctcatcaa
aaagagggaattgagttgatatggagaacgacttgtggcgggataagaatcgatgagctt
gctactgaactaacaaaaccaggtgtaggagggtgcatcatatgtcatgctccaggaaca
ggaaaaacccgactagccattgtttttttacagtcctttatgaagaaataccctaattca
aagcctgttattattgccccttgtagcatgctccaaacatgggaagaggagtttgcgcga
tggaacgttgacgttccttttttcaatgtgaacaataaggaactgtcggaaaaggaaaat
aatctgatgcgcaaatgcggtctgcagaagttgaatttaaaagacgagaaattagtcagg
gtggcaaagattggttgttggtcgacagggaaaggtgttctgggtattagctataggctg
ttccagagactagctagtgataatggaaaggagaaagagcaaaatgaaaatattagggaa
cttcttcttgagaagcctgatattttagttttagatgaagggcacacaccgagaaatgac
aagagtaaatcattgaatgttctgtcacaggttgcaacaaagaggcgcgtgatcttatca
gggacaccattccaaaataaccttgaagaattcaagaacacgatttccttggttcgagaa
gattttgggtatctatcgtcagaattctcttgttcttatttgagtgatagaagaattgaa
aagctgaagaaaagaatgaaagattttgtgcatgtttacagtggtgcaattcttaaagaa
actcttcttccattgtttcactctgtaatctttctaaggccgtccaatttacaaaagttg
ttcttctcagcaataagatctagatacaaattcatcgaaaatgactacttgacatctgtt
gcctctgttcacccgtcgatcttttgtgggaaaaaattgcactcttctgttgatcaagaa
tggaaggatttattggaaaagcatagaacagacataagagcaggagtaaagctgcaattt
cttgtagagctaattaatctatgcaaaggagagcgagttttagtgtttgcacaatatctc
cccccattaaacttcattgaagattttcttaaattttgttttgattggactagagggagg
gaaattgtttacatcgatggagagcaagacatgaaggaaaggcattcttctatcaagctt
ttcaatgaccctatgagcgacgctagagtccttctagcctcgaccaaggcttgttgtgaa
gggataaacctagtgggtgcctcaagggtggtcttgcttgatgttgtgtggaatccctcc
gtggaaaggcaggccataagccgtgcttatagaatcggacaaaaaaggaatgtgtttgtt
tatcatctcattagtttggggactgtagaagaagagaagtatcggaggaaggcaatgaag
gcacgtttatcagagcggttattcttctcttgcagtccagatggggaagcaatgcataaa
aagagtgcagtttctgaagattgcatactgaaagccatgatccatcatgaaaaaaccagg
aacatgtttgaaaacattatcagtcaacctagagctgatgatttggtccaaagttttagc
cttctgaatttttaa
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