Amaranthus tricolor (tampala): 130799807
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Entry
130799807 CDS
T09367
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03030
DNA replication
atri03420
Nucleotide excision repair
atri03430
Mismatch repair
atri03440
Homologous recombination
atri03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130799807
03420 Nucleotide excision repair
130799807
03430 Mismatch repair
130799807
03440 Homologous recombination
130799807
03460 Fanconi anemia pathway
130799807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
atri03000
]
130799807
03032 DNA replication proteins [BR:
atri03032
]
130799807
03400 DNA repair and recombination proteins [BR:
atri03400
]
130799807
Transcription factors [BR:
atri03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130799807
DNA replication proteins [BR:
atri03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
130799807
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
130799807
MMR (mismatch excision repair)
130799807
DSBR (double strand breaks repair)
HR (homologous recombination)
130799807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
zf-CCHC
CDC24_OB3
DUF223
Motif
Other DBs
NCBI-GeneID:
130799807
NCBI-ProteinID:
XP_057519030
LinkDB
All DBs
Position
14:9600791..9605227
Genome browser
AA seq
868 aa
AA seq
DB search
MANTLTEGAIEAICNGDNDLKPVLQVADIRLVNTQNPSSATERYRLLLSDGLHLQQGMLA
TQRNELVKSGVLQKGSIVRLLQSVCNVIQGRTIIIIIELEVVQEICPTIGEPKQYVNGGV
RTTAQVPSSVGQTGVISGNAQQSNMHPPVSGSTLGSSGPGVVLQQPKLERGAPMQSYGGS
SASNPVSGHYTTNSGSPLHSKLEFGSGGSVKSATPGSYGVYNNANTDFSRAPSNTYARNQ
QPSYQQPPPMYMNRGPIAKNEAPPKIIPIAALNPYQGRWTIKARVTSKGDLRHYNNPRGD
GKVFSFDLLDSDGGEIRVTCFNAVADQFYDQIEVGKVYLISKGSLKPAQKNFNHLPNDHE
IVLDMSSIVQPCFDDDAGIPKQQFHFRPISDIEGIENNGIVDVIGVVSSISPSSSIMRKN
GTEAQKRTLQLKDMSGRSVEVTLWANFCNAEGQTLQNMCDNGMYPVLAVKSARVYEFNGK
GVGTLSTSQLFIEPDFPEAKRVKDWFDREGRNLLSVSISRDTASSATRGDARKTILQIKD
EKLGTFEKPDYITVCATITYIKMDNFCYTACPLSNGGRQCNKKVINNGDGRWWCDKCDQA
VGECDYRYILQLQLQDHTATTWATGFQEIGEEILGITAKNLYYLKNEEQNDEKVVEISRA
AVFNKYIFKLKVKEENYNDEQRVKSTIMKVEKLNFAAESRLLLESMRKTKLGDSCPATVK
SENFTPNIGTNRSVMGHVGISQPIISGVSYGTNPGLSDRETGMYTNNTSQFGNQYSSRYV
GASSGVPITCSSCGGASHNSSNCPSILSTPGGIIMSHNVPGGSNSGQCFKCQKVGHSARD
CPGLSFVPPAYGAAGRYGGVQRQHVGSL
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatactttaacggaaggagcaattgaggcgatatgtaatggcgataatgatttg
aaaccagttcttcaagtagcagatattcgtcttgttaatactcaaaaccctagcagtgca
actgagagatatcggcttctgttgtctgatggtttgcatttgcaacaaggaatgctcgca
actcagcgaaatgaacttgttaaatctggtgttttgcagaaaggttctattgtacgattg
cttcaatcagtctgtaatgttattcaaggccgaacaattataattatcattgaacttgaa
gtagtacaagagatctgccccacaattggagaaccaaagcaatatgtgaatggtggtgtt
agaactactgctcaagttccctcctctgtgggtcaaactggggtcatttctggcaatgct
cagcaatcaaatatgcatccaccagtatctggttcaacacttggatctagtggaccaggg
gttgttttacagcagccgaagctggaacgtggtgctccaatgcaatcttatggcggttct
tctgctagcaatccagtctctggacattataccacaaatagtggatctccattgcactct
aaattagaatttggctctggtggctctgtaaaatctgcaactcctggttcatacggagta
tataataatgccaacacagatttctcacgtgctccttcaaatacttatgcaaggaatcag
caaccttcctatcagcaacctcctccaatgtacatgaataggggccctattgctaaaaat
gaggcccctcctaagataattccaattgctgccctaaatccctaccaaggtcgatggact
atcaaggcaagagtaacatcaaagggtgaccttaggcactataataatccccgtggggat
gggaaagtattttcctttgatcttttagattctgatggtggcgaaattcgagttacctgc
tttaatgctgtggctgatcaattctatgatcagattgaggttggcaaggtatacctgata
tccaaagggagcttaaaacctgctcagaagaactttaatcatctccccaatgatcatgag
atcgtattggatatgtcatctatagttcaaccttgttttgatgatgacgctggaattcct
aagcagcaatttcatttccggcccattagtgacattgagggtatcgagaacaatggtatt
gtggacgtgattggtgtagtgtcttcaatcagtccgtcgtcctcgattatgagaaaaaat
ggaaccgaagctcagaaaaggactcttcagttgaaggatatgtctggcagaagcgttgaa
gtgaccttgtgggcaaatttttgcaatgcagaagggcagaccttgcaaaatatgtgtgat
aatggaatgtatcctgttctagctgtcaagtcggccagagtgtatgaattcaatgggaag
ggtgtgggaactctttcaactagtcagttatttatagaaccagactttccggaggctaag
agggtgaaggactggtttgacagggaaggaaggaacctgctatctgtttccatttcaaga
gatactgcaagttcggctactaggggtgacgctcgtaaaactatattgcagattaaggat
gagaaactggggacctttgaaaagcctgattatattactgtttgtgccaccattacgtat
ataaagatggacaacttctgttatacagcatgtcctcttagtaatggcggacgtcaatgc
aacaaaaaggttataaataatggagatggaaggtggtggtgtgataaatgtgatcaagct
gttggtgaatgtgattataggtatatacttcagttgcaattacaggatcatacagccaca
acctgggcaacagggttccaagaaataggtgaagaaattttgggcatcacggctaaaaat
ttgtattacttaaaaaatgaggaacaaaatgatgaaaaagttgtggaaatcagtcgtgca
gcggttttcaacaaatacatatttaagttgaaagtcaaggaggagaattataatgacgag
caacgagttaagtcaactatcatgaaagtagagaagctaaactttgctgcagagtcaagg
cttcttttggaatcaatgagaaaaacgaaactaggtgattcttgtccagcaaccgtcaaa
tctgagaatttcactccaaatattggaacaaatagatcggtaatgggtcatgttggaatc
agccagccaatcatttcaggagttagctatggaacaaatccgggactttctgatcgagaa
acgggcatgtataccaataacacaagccagtttgggaaccagtatagcagcaggtatgtt
ggtgcttcttctggggtgccaataacatgtagtagttgtggtggtgcaagccacaattca
tcaaattgtcctagtattctcagtactccaggcggcattattatgagtcataatgtgcct
ggtggaagcaattccggacagtgctttaaatgccagaaagttgggcattctgccagagat
tgccctggattaagctttgtccctccagcttatggtgctgctggtagatatggtggtgtt
cagagacaacatgttggcagtttgtaa
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