Amaranthus tricolor (tampala): 130799816
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Entry
130799816 CDS
T09367
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130799816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atri03041
]
130799816
03009 Ribosome biogenesis [BR:
atri03009
]
130799816
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130799816
Spliceosome [BR:
atri03041
]
Complex A
U2 snRNP components
U2 related factors
130799816
Complex B
130799816
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
130799816
Ribosome biogenesis [BR:
atri03009
]
Eukaryotic type
90S particles
Helicases
130799816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_22
AAA_19
nSTAND3
SRP54
ResIII
T2SSE
AAA_30
ABC_tran
PhoH
AAA_33
Flavi_DEAD
AAA_7
TsaE
AAA_11
FtsK_SpoIIIE
AAA_16
NB-ARC
NACHT
Motif
Other DBs
NCBI-GeneID:
130799816
NCBI-ProteinID:
XP_057519041
LinkDB
All DBs
Position
14:2569378..2574288
Genome browser
AA seq
729 aa
AA seq
DB search
MGTERKRKVSLFDVVDDNALIPGKLSKANGSLIMNSGTGNASINRWNGRPYSQRFFEILE
KRKSLPVWQQKEEFLQVLNNNQIIILVGETGSGKTTQIPQFVLEAVELESPDKKRKMMVA
CTQPRRVAAMSVSRRVAEEMDVTLGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDP
LLERYTVIILDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQDYFNGAPL
MKVPGRLHPVEIFYTQDPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKIT
KEIANLGDQVGPVKVVPLYSTLPPAMQQKIFESAPAPLKEGGPPGRKIVISTNIAETSLT
IDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKS
FHNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLSAL
DDEGNLTRLGEIMSEFPLDPQMGKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKA
ADEAKARFGHIDGDHLTLLNVYHAYKQNQEDPNWCYENFVNQRALKSADNVRQQLVRIMA
RFNLKLCSTDFNSRDYYLNIRKAMLAGYFMQVAHLEKTGHYLTVKDNQVVHLHPSNCLDH
KPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLENFPNCEAKRVLEKLYKKRER
DREDSKNKR
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgggaacagagagaaagaggaaagttagcttgttcgatgtagttgatgataatgcccta
attccaggcaagctctcgaaagccaacgggtccttgattatgaacagcggaaccggtaat
gcttcgattaatcgctggaatggaagaccttattctcagcgattttttgagattttggaa
aagcgaaaatctcttcctgtttggcagcaaaaggaggagtttttacaagttcttaataat
aatcagattataatcttggttggtgaaactggtagtggtaaaactacccagattccccaa
tttgtattagaagctgtggaacttgagagtcctgataaaaagcggaagatgatggttgct
tgtacccagcctcgtagggtggcagcaatgtcagtgtcacgaagagttgcagaggagatg
gatgtgactctaggagaagaagttggttatagcattcgttttgaggactgtagtagtgca
agaacggttttgaagtatctgacagatggtatgcttttgagagaagcaatgacagatcca
cttctggagaggtatacagttataattcttgatgaagctcatgaaaggacgttggctacc
gatgtcttatttgggctgttgaaggaagttttgaggaacagaccagacttaaaactggtc
gttatgagtgctacactagaggcagaaaaatttcaagattatttcaatggtgcacctctt
atgaaagttcctggaaggctgcatcctgtggagattttttacacccaggatcctgaaaga
gactaccttgaggctgctatccgaactgttgtacaaatacatatgtgtgaacctcctggt
gacatccttgtattcctcactggagaagaggaaattgaggatgcttgccgtaaaattaca
aaagaaatagcaaatttgggtgaccaagttggccccgtgaaagtcgttccattgtattct
acccttcctcctgctatgcagcagaagatatttgaatctgctccagcaccattgaaagag
ggaggtcctcctgggagaaaaattgtgatatctactaacattgcagaaacttctttgaca
attgatggtatagtttatgtgattgatccaggatttgccaaacaaaaagtgtataatcct
cgagttcgcgttgagtcattgttggtttctcctatatcaaaggcaagcgcacaccagaga
gctggtcgtgctggaagaacacagcctggtaaatgttttaggctatacacagagaaaagt
ttccacaatgatcttcagcctcagacatatccagaaatactgcgatcaaatcttgcaaat
actgtactcacactgaagaagttgggcattgatgatctggtacattttgatttcatggac
cccccagctccagaaactcttatgcgggctttagaggtgctgaattatcttagtgctctg
gatgatgagggtaatttgaccaggcttggagagatcatgagtgaatttccactggatcct
cagatgggaaagatgcttgttgttagccctgaatttaactgttcaaatgaaatcctatca
atatcagcaatgctttcagtacccaattgctttgtgaggcctagggaggcccagaaagct
gcagatgaagctaaagctaggtttggacacatcgacggagatcacctgaccttgttgaac
gtatatcatgcctacaagcagaatcaggaggacccaaactggtgttatgagaattttgtc
aaccagagggcgttgaagtctgcagataatgtaaggcagcaacttgttcgcattatggcc
agattcaacttaaagttgtgcagtacggatttcaacagcagggactactatctcaacata
cggaaagcgatgctggccggatatttcatgcaagtagcacatctggaaaagactggacac
tatctgacagtgaaagataaccaagtggttcacttgcatccttcaaattgcctggaccat
aagccagagtgggttatatacaacgaatatgtgttgacgagccggaatttcattcgtact
gtcactgatattcgtggtgaatggcttgttgatatagcaccacactactatgaccttgaa
aatttccccaactgtgaagcaaaacgggttttagagaagctctacaagaagcgtgagagg
gacagggaagatagtaagaacaagaggtag
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