Amaranthus tricolor (tampala): 130799994
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Entry
130799994 CDS
T09367
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130799994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130799994
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
130799994
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_15
TPR_19
TPR_16
TPR_2
TPR_Slam
Motif
Other DBs
NCBI-GeneID:
130799994
NCBI-ProteinID:
XP_057519296
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Position
14:complement(5893502..5919820)
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AA seq
751 aa
AA seq
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MADIDDTNNNKYNVEAAEILANEASRMPITEAVPIYEQLLAIYPTAAKFWKQYVEAQMAV
YNDDATRQIFSRCLLNCLQVPLWRCYIRFIKKANEKKGFEGQEETRKAFEFMLNYVGADI
SSGPVWMEYISFLKSNPQARTTQDETQRIIAVRKAYQKAIITPNHHVEQLWKDYENFENS
VSRVLAKGLVSEYQPKFNSARAVYRERKKYIDEIDWNMLAVPPTGSCKDEQQWMAWKKLL
AFEKGNPQRIDNTLSNKRIVFSYEQCLMYLYHYPDIWHDYATWHAKSGSVDSSVKVYQRA
LKALPDSEMLKYAYAELEESRGAVQPARKLYESLLGDGVNATALSHIQFIRFLRRTEGVE
AARKYFLDVRKSPHCTYHVYVAYAMMAFCLDKDPKIAHNIFEAGLKRFMHEPGYILEYAD
FLSRLNDDRNIRALFERALNSLPPEESVEVWKRFAHFEQTYGDLSSMLKVEQRRKEALSR
TSDDATLAHESSLQEVVSRYSFMDLWPCSSKDLDHLARQEWLAKNMNKKVEKPSILNGAG
TTGDEKSTSGVSTLLDQSSKIVYPDVTQMMVYEPGQKLGSTVPPSGTVGGLPALSATVPT
YDGIMKAAPPTLLAFIANLPAVEGPAPDVDFVLSICLQSNPVPEQASKHLTTVTQLPAGA
ASSKNEPSGSYISRPIPSGSSSRMTRDRQSGKRKDSERQDDDEIASVQSAPLPKDAFKLR
QMRKARGGTASQTGSTSYGSVFSGEQSGSTS
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggcggatattgatgatactaataataacaaatacaatgttgaagctgctgagatttta
gctaatgaggcatcgcgtatgcccattactgaagcagttcctatatatgaacaacttctg
gccatttaccctactgctgcaaaattttggaagcagtatgtggaggcacaaatggctgtt
tataatgatgatgctacaagacaaatatttagccgctgtctgttgaattgtctccaagtt
cctctttggaggtgctatatacgtttcataaagaaggctaatgagaagaagggtttcgaa
ggtcaagaagagaccagaaaagcctttgagtttatgttgaattatgttggagctgatatt
tcctctggtccagtgtggatggagtacatcagcttcttaaaatctaatccgcaggctcgc
acaacacaggacgagactcagcgaattattgctgttcgcaaagcgtatcaaaaagctatt
atcactccaaatcaccatgttgaacaactatggaaggactatgagaattttgaaaattct
gttagccgagtgctggctaagggacttgtttcggagtaccaaccaaaatttaatagtgcg
agagctgtctatcgagagaggaagaaatatattgatgaaattgattggaacatgctagcc
gtcccaccaaccggttcttgcaaggacgaacaacaatggatggcttggaaaaaactttta
gcatttgaaaaagggaatccacaaaggatcgacaacacattatctaataagagaattgtt
ttttcttatgagcagtgtctgatgtatctatatcattatcctgatatctggcatgactat
gctacctggcatgcaaaaagtggctctgtagattcctctgtcaaagtttatcagagagct
ctgaaggcacttcctgattctgagatgctgaagtatgcttatgctgaattggaagaatcc
cgtggagcagtccagcctgcaagaaaactttatgagagccttttaggtgatggggtgaat
gcaactgctctttcacatatacaatttatcagatttcttagaagaacggaaggagttgaa
gctgctcgcaaatactttttggatgttcgcaagtcaccacattgcacttatcatgtctat
gttgcatatgctatgatggctttttgtcttgacaaagatcctaagattgctcataatatt
tttgaagcaggattgaaacggtttatgcatgagcctggatacatcctggaatatgcagat
tttttgtcgcgtttgaatgatgacagaaacataagagctttatttgaacgcgcacttaat
tcacttccacctgaagaatctgttgaggtttggaagcggtttgcacattttgagcaaaca
tatggtgatctttccagtatgctgaaggttgagcaaagaagaaaggaggctctctcaagg
accagtgacgacgcaactttagcacatgagagttcattacaggaagtagtatcgcgatac
agtttcatggatctttggccatgttcatcgaaagatctggatcatttggcacgtcaagag
tggcttgctaagaacatgaataagaaagtggagaagcctagcatactgaatggagctggt
actacaggtgacgagaagagtacttcaggtgtcagtacactgttggatcaatcttcaaaa
atagtatatccagatgttacccagatgatggtatatgagccaggacagaaactaggatct
acagttccacctagtggaacggttggtggacttcctgctctttctgctaccgtgccaaca
tatgatgggattatgaaagctgctcctcctacacttctggcattcatagcaaatcttcct
gctgtagaaggtccagcaccagatgtagattttgtgctgtcaatatgtttgcaaagcaat
cctgtaccagaacaagcttcgaagcatttgactacagttacgcaattacctgctggagct
gcttcttcgaaaaatgagccttctggctcatacatatcgcgccctattcctagtggttcg
tcttctaggatgacaagagacagacaatctggaaagaggaaagattcagagagacaagat
gatgatgaaattgcatcagtgcagagtgcacctcttcctaaagatgccttcaaattacgc
caaatgcggaaagctcggggaggaacggcgtcacaaacaggatcaacgtcatatggaagt
gtcttctccggagaacaatctggcagcactagctaa
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