Amaranthus tricolor (tampala): 130800018
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Entry
130800018 CDS
T09367
Name
(RefSeq) transcription factor bHLH140 isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
130800018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atri03400
]
130800018
Enzymes [BR:
atri01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
130800018
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
130800018
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
130800018
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
130800018
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
130800018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
Macro
zf-C2HE
HIT
AAA_18
Zeta_toxin
N6_N4_Mtase
MeaB
ABC_tran
DNA_pol_lambd_f
AAA_29
Motif
Other DBs
NCBI-GeneID:
130800018
NCBI-ProteinID:
XP_057519325
LinkDB
All DBs
Position
14:6204700..6211021
Genome browser
AA seq
772 aa
AA seq
DB search
MEKEMEIDSFTQGSVNEVEKGNGKALIVIMVGAPGSGKSTFCDLVIGASSRCWIRICQDN
INNGKSGTKAQCLSSAVVALKDNKSVFIDRCNLDREQRAEFVKLRTPEVDVHAVVLDLPA
KLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLSEGFSRITICQSERDVEDAIST
YSKLRAHDILPSGCFAQKSPDAKVQSGILKFFKKVDPPTLGSCSSGMGSSSSSPSSAKET
QFCDGGSKSNYSRSVSVVGEKGDHMEVDSVSDTATLAKPVTVSCSSDIAATLAFPSISTA
DFQFDHDKASDIIVEKVEEYLRKLRNVKLVLVDLTHKSKILSLVKVKAAKRNISPEKFFT
FVGDITCLYTKGGLRCRAIANAANWRLKPGGGGVNAAIYNAAGASLETATKERANSLTPG
KAVVIPLPANSPLFIKEGVKHVIHVLGPNMNPQRPNCLKNNYDEGCEILREAYSSLFEGF
ASIVETDLLETKGNNGENHSKSELSNHGAQRDDNASELKMKREIGFGEERSKKYKGLKYE
VGSGNNNMGNSKEQHEKLKKHVSTSKSWGSWAQALYNIAMNPEKHKDDVLEMTTDVVVLN
DAYPKAKRHILVLARLDHLDSLEDVRQEHLKLLTTMHQVGMKWIERFLAEDESLCFRLGF
HSVPSMRQLHLHVISQDFNSLHLKNKKHWNSFNTDFFRDAVDVIEEVEKYGKPSIQDDKL
LSKELRCHRCKSAHPNIPRLKSHISNCQAPFPATLLLKGRLVWGANKTDASS
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggaaatggaaattgattctttcacacaaggatcagtaaatgaagtagaaaaa
ggaaatggaaaagctttgattgtgataatggtgggtgcacctggcagtggcaagtctacc
ttctgtgatcttgttatcggcgcttcttctcgttgttggattcgaatttgccaggacaat
attaataatggtaaatctggaacaaaagctcaatgcttaagcagtgcagttgttgcactg
aaagataacaaaagcgtattcattgacagatgcaatctagacagagaacagcgtgccgag
tttgtgaagctcagaacccccgaggttgatgttcatgcagtggtgcttgatctgcctgct
aagctctgtatctcacgctctgttaaacgtacaggacatgaagggaacttgcagggagga
aaagctgctgcagttgtaaataggatgctacagaagaaggaactcccaaagctgagtgaa
ggcttttctcgaatcaccatatgccagagcgagagggatgttgaagatgctatttctacg
tatagcaagcttagagcacatgatatcctcccttcagggtgctttgcacagaagagccca
gatgctaaggtccaatctggtattttgaagtttttcaaaaaggtggatcctcctactttg
ggttcttgttcaagtgggatgggaagttcttcctctagcccatcgtcagcaaaagaaaca
caattttgtgatggaggatctaaatctaattactctagaagtgtaagtgttgtgggggag
aagggagatcatatggaagtggattcagttagtgataccgctactttggcaaagcccgtg
actgtttcttgttcctcagatatagccgccaccctagctttcccttccatttcaaccgcg
gactttcagtttgaccatgataaggcttctgatattattgttgagaaagtagaggaatat
ttgagaaagctgaggaatgttaaacttgttttggtggatttgactcacaaatcaaagata
ttgtctttggttaaggtgaaagctgctaaaaggaacatcagtcctgaaaagtttttcact
tttgttggagatattacttgcctatacactaaaggaggcttacgctgtagagctatagct
aatgcagctaattggcgactaaaacctggaggtgggggtgtgaatgctgctatatacaac
gctgcaggtgctagtctagagactgcaacgaaagaaagagcaaactctctcactccagga
aaggccgttgtcattccccttcctgccaactcacctttgttcattaaagaaggagttaag
catgtcattcatgttcttggaccaaatatgaatccccaaaggccaaattgtctgaagaat
aactatgacgaaggctgtgaaatccttcgtgaggcttactcttcactttttgaagggttt
gcatctattgttgagaccgatttactggaaactaaaggaaataatggggagaatcactcg
aagtctgaactatcgaaccacggagcacagagagatgataatgcttccgaactgaaaatg
aaaagagagattggttttggtgaagaaagaagtaagaagtacaaagggttaaagtatgaa
gttggatcaggcaacaacaatatggggaattcgaaggagcaacatgaaaaattaaagaaa
catgtcagtacatctaaatcttgggggtcttgggcacaagctttatacaatatagcaatg
aatcctgagaagcataaagatgacgtgctagagatgacaactgatgttgttgtactaaat
gatgcttacccaaaggcaaaaaggcacattcttgtgctcgcacgtttggatcatttggat
agccttgaagatgtgcgccaggagcaccttaagctattgacaacgatgcaccaagtgggc
atgaaatggattgagaggttcttggcggaggatgagtcactatgttttcgccttgggttc
cattccgttccgtcaatgaggcagttgcaccttcatgtgatcagtcaagacttcaactcg
ttgcatttaaagaacaagaagcattggaactctttcaatactgatttctttcgagacgca
gttgatgtaattgaggaagttgagaaatacggaaaaccctcgatacaagatgataaactg
ttatcaaaagagttgagatgccaccgctgtaagagtgcacaccctaatatacctcgtctt
aaatcacacataagcaattgccaggctccgttccctgccacactacttctaaaaggtcgc
ctcgtatggggagctaacaaaaccgacgccagctcatag
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