Amaranthus tricolor (tampala): 130800393
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Entry
130800393 CDS
T09367
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03030
DNA replication
atri03420
Nucleotide excision repair
atri03430
Mismatch repair
atri03440
Homologous recombination
atri03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130800393
03420 Nucleotide excision repair
130800393
03430 Mismatch repair
130800393
03440 Homologous recombination
130800393
03460 Fanconi anemia pathway
130800393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
atri03000
]
130800393
03032 DNA replication proteins [BR:
atri03032
]
130800393
03400 DNA repair and recombination proteins [BR:
atri03400
]
130800393
Transcription factors [BR:
atri03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130800393
DNA replication proteins [BR:
atri03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
130800393
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
130800393
MMR (mismatch excision repair)
130800393
DSBR (double strand breaks repair)
HR (homologous recombination)
130800393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
DUF223
tRNA_anti-codon
CDC24_OB3
RMI1_C
DUF5651
Motif
Other DBs
NCBI-GeneID:
130800393
NCBI-ProteinID:
XP_057519872
LinkDB
All DBs
Position
14:complement(4264622..4268773)
Genome browser
AA seq
620 aa
AA seq
DB search
MEVRTVTPDAISKIIANPSPDFSVERPDLVVQVLDLKSVGNRFMLTASDGKQKIKGILQS
SFSDMVSSGSIQNLGLIRILEYTLNDIPNKPEKYLLITKCEAVSPALEAEVKSEDSGVVL
KPHQDVVKAESNSEVSGLVLKPKQEIVAKSAAQIIHEQRGNEAPAARMAMTRRVLPLASL
NPYQGNWTIKVRVTSKGNLRSFRNARGEGNVFNVELTDEDGTQIQATMFNEAARMFFDKF
QVGKVFYISKGFLKVANKQYKTVQNDYEMTLNENSVVEEASDEGVFIPETKFNFVPIDQL
GLYVNGKEFVDVIGVVKNVSETMSIRRKINNEMIPRRNITIADESKKTVVVSLWNEHATT
LGQELLDMADKSPVIAIKTVKVGDFQGVSLSAISKSIAKINPDIPESKKLKSWYESEGKE
ASMASVGAGMTPSNSGGRSMYTDRVSISHITSSPSLGEDKPVFFNIKACISLIKADQALW
YRACKTCNKKVTEAIGSGYWCEGCQKNEAECNLRYVLNAKISDASGEAWVSTFNEQAEKL
IGCSADELDKLKSQDGEENLYQMKLKEAAWVPHIFRVSVSQQEYMNEKRQRITVRAVAQL
DCAAETSYLLAEIAKMKVSQ
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgaggacagtgacgccagatgcaatatcaaagataattgcaaacccttctcca
gatttttctgttgagcgtcctgatcttgttgttcaagttcttgatttgaagtctgttggc
aaccgatttatgctgactgcctccgatgggaagcaaaagattaaaggaattctgcagtca
agcttttcagacatggtttcttccgggtcaattcagaatttgggtcttattcgaattctt
gaatacacactcaatgacattccaaacaaaccagaaaagtatttgctcataactaagtgt
gaggctgtgtcgcctgcccttgaggcagaggtgaaatctgaggattctggtgttgtttta
aagccacaccaagatgttgtgaaagctgaatccaatagtgaagtttctggtttagtgctt
aaacccaagcaggaaattgttgcgaaatcagctgcacagatcattcatgagcaaagagga
aatgaggcaccagctgcaagaatggcaatgaccaggagagttctccctttagcttcttta
aacccttaccaagggaattggaccattaaggttcgagttaccagcaaggggaacttaaga
agctttaggaatgcaagaggagagggaaatgtcttcaatgttgagttaaccgatgaagat
ggtactcaaatacaagcaacaatgttcaatgaagctgctaggatgttctttgacaagttt
caagtcgggaaagttttctacatttcaaagggatttctgaaagtggcaaataaacagtat
aagactgtacaaaatgactatgaaatgaccctcaatgagaattctgtagttgaggaagct
agtgatgaaggggtatttatccctgaaacaaagttcaattttgtcccaattgatcagttg
ggcttatatgtgaatggaaaggaatttgtagatgtcattggagtcgttaaaaatgtgtct
gagacaatgagtatcaggaggaaaatcaataatgagatgattccaaggcgcaatatcact
attgctgatgaatcgaagaaaactgtggtagtttctttatggaatgagcatgctacaaca
cttggccaagaattgttggatatggctgataaatcccctgttattgccattaaaactgtc
aaagttggagacttccagggtgtgtcactgtcagcaataagcaaatccattgctaaaatc
aatcctgatatacccgaatcaaaaaagttgaagtcgtggtatgaatcagaaggtaaagaa
gcctcgatggcttcagtgggtgctggtatgaccccttctaatagcggagggcgatcaatg
tataccgatagagtctccatttcacatatcacaagcagcccatctcttggtgaagataag
cctgtgtttttcaacataaaagcttgtataagcttgattaaggctgatcaggctttgtgg
tatcgtgcctgtaagacgtgcaacaagaaggtgactgaagctattggatctgggtactgg
tgtgaagggtgccagaagaatgaagcagaatgcaacttaagatacgtgttgaacgcaaaa
atatcagatgcaagtggtgaagcatgggtttcaaccttcaatgaacaagcagagaaactt
atcggctgctctgctgatgagcttgacaaattaaaatcacaggacggagaagaaaatcta
taccaaatgaaactaaaggaagctgcatgggtacctcatatcttcagagtaagcgtttct
caacaagagtacatgaacgagaaaagacaaaggataactgttagggctgttgcacagctt
gattgtgcagctgaaacaagttatctgctggctgagattgcaaaaatgaaagtctctcag
taa
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