Amaranthus tricolor (tampala): 130800449
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Entry
130800449 CDS
T09367
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130800449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atri03400
]
130800449
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130800449
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Tht1
Motif
Other DBs
NCBI-GeneID:
130800449
NCBI-ProteinID:
XP_057519960
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Position
14:complement(4790026..4799421)
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AA seq
944 aa
AA seq
DB search
MEDNLNLLDQNKLPELKLDAKQAQGFLSFYKTLPQDCRAVRIFDRRDYFTAHGENAAFIA
KTYYHTTTALRQLGSGSDGLSSVTISKSMFETIARDLLLERTDHTIELYEGSGSNWRLMK
SGSPGNLGNFEDILFANNEMQDSPATVALLPNFKENSCNVGLGYVDLSQRVVGLAEFLDD
SHFTNVESALIGLGCKECLLPADVSKSTEGRGLLDALSRCGVMVTERKKSDFKARDLVPD
LGRLIKGSIEPVRDLVSGLEIAPAALGALLTYAELLSDESNYGNFIIKPYNLGSCMRLDS
AAMRALNVMESKNDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVKDINTRLDLVQ
AFVEDIELRQDLRQHLKRISDIERLIRNLQKKRAGLHHVVKLYQSSIRLPYIKSALGKYD
GQFSALIKDRFLEPIEMWTDDDHLNKFVALVETSIDLDQLENGEYMISSGYDSRLLELKY
EQESLAREIDTLHRKTADELDLVVDKVLKLEKGTQFGHVFRITKKEEPKIRKKLTTQFIV
LETRKDGVKFTNSKLKKLGDQYQRILEEYKNCQKELVQRVVQTAATFSEVFEALAALLAE
LDVLLGFADLATSCPTPYTRPDITSSDVGDIILEGCRHPCVEAQDWVNFIPNDCKLVRGQ
SWFQIITGPNMGGKSTYIRQVGVNVLMAQVGSFVPCENASISVRDCIFARVGAGDCQLRG
VSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVDVIKAPTLFA
THFHELTALAHDKGGDEPSNKKTVGISNFHVSAHIDSASRKLTMLYKVEPGACDQSFGIH
VAEFANFPETVVSLAREKAAELEDFSPTTINSVDPSKEVGQKRKRALDPDAVSQGAARAH
RFLKEFAELPLEQMDLKQALQHVNKMKNDLEKDAENCHWLKQFL
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaatttgaatttgctggatcaaaacaagctcccagaactaaagctcgatgca
aagcaggcgcaagggtttctgtcattctataaaaccctacctcaagattgtcgggctgtt
cgaatttttgatcgtcgggattattttactgctcatggagaaaatgcagcttttatagcg
aaaacttattatcacactaccacggccttacggcagttaggtagtggttctgatggcctt
tccagcgtaactataagtaaaagcatgtttgaaacgattgctcgtgatctacttttagaa
aggacagaccatacaattgaactgtatgagggtagtggttcaaattggagacttatgaag
agtggaagtccaggaaacttgggcaatttcgaagacattctttttgccaataatgaaatg
caggattctcctgctactgttgcattgttacccaacttcaaggaaaatagttgcaatgtt
ggtttgggctatgttgatctaagtcagagagtggttggattggctgaatttctggatgat
agccattttacaaatgtggaatcagctttgattgggctgggttgcaaggaatgcctactc
ccagctgatgtttccaagtctaccgaaggaaggggcttgcttgatgcattgtcaagatgt
ggtgtgatggtaactgaacgaaaaaaatctgactttaaagccagggatttggtgccagat
ctcggaagactaatcaaaggttcaattgagccggtgcgtgatctagtttcaggacttgaa
attgcccctgctgctttgggcgcattgctaacttatgcagaattactttcagatgaaagc
aattatggaaatttcattattaagccttataatctgggtagttgcatgaggctcgactct
gctgctatgagagcattaaatgttatggagagcaaaaatgatgcaaacaaaaattttagt
ttatttggtttgatgaacagaacctgtacggctggaatgggaaaacggttgcttcacatg
tggctcaagcagcctttgttagacgtaaaagacataaatactcggctggatttggtacaa
gcttttgtggaggatatagaacttcgccaagatttgaggcagcatctgaaaagaatatct
gatatagaaagattaatacgcaatcttcaaaagaaaagggctggtttacatcatgttgta
aagctttatcaatcaagcattagacttccatacattaaaagtgcacttggaaagtatgat
gggcaattttctgcattaattaaggacaggtttttggagcccattgagatgtggactgat
gatgatcatttaaacaagtttgtggcccttgttgagacttcaatagaccttgatcaactt
gagaatggcgaatacatgatttcatctggttatgactcgaggcttcttgaactaaaatat
gaacaagagtcacttgcgcgtgaaatagatactcttcacagaaaaactgctgatgaactc
gatctcgttgttgataaagttctaaagttagagaagggtacacaatttggtcatgttttt
agaataacaaagaaggaagagccaaaaattaggaaaaaacttaccacacagtttattgtg
cttgagacacgaaaggatggtgtcaaatttacaaattcaaaactcaaaaaactaggggat
cagtatcagagaatactggaggagtacaagaattgccaaaaggaattagttcaacgagtg
gttcagactgctgccaccttctctgaggtttttgaggcgttagctgcattgctagctgaa
ctggatgtattactcggttttgctgacttggcaacaagttgtcctactccttacacaaga
ccagatattacttcatctgatgttggggatatcatattagaaggctgtagacacccctgt
gtggaggcgcaggattgggtgaatttcataccaaatgactgcaaacttgttagaggacaa
agctggttccaaattatcacagggcccaacatgggtggaaaatccacttacattagacag
gttggtgtaaatgttttgatggcacaagtgggatcgtttgttccttgtgaaaatgcaagt
atttctgttcgtgattgcatatttgctcgtgttggtgctggtgactgccaattgcgagga
gtctcgactttcatgcaagaaatgctcgagactgcctcaattttgaagggcgccactgac
aagtcacttataatcattgatgagttaggccgagggacatcaacttatgatgggtttggt
cttgcctgggctatttgtgagcacattgttgatgtcatcaaggcacctactttgtttgca
acccactttcatgaactcacagcattagcccatgataagggaggggatgaaccttccaat
aaaaagactgttggtatatcaaatttccatgttagtgcacacatagattcagcaagtcgc
aagctaacaatgctttacaaggttgaaccaggggcttgtgatcaaagttttggtattcat
gtcgcagagtttgccaacttccctgaaacggttgtatcccttgctagagaaaaagcggct
gaattggaagatttctcccctaccacaattaattctgtcgacccttcaaaagaggtggga
cagaagcggaagagggcattggatccagatgcagtctctcagggtgcagcgagggctcat
cgctttttaaaagagtttgctgagcttcctttagaacagatggatttgaagcaagcattg
cagcatgtgaataaaatgaagaacgacttagagaaggatgccgaaaactgccattggtta
aagcaatttctctag
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