Amaranthus tricolor (tampala): 130800670
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Entry
130800670 CDS
T09367
Name
(RefSeq) flowering time control protein FY
KO
K15542
polyadenylation factor subunit 2
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130800670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130800670
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
130800670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_HPS5
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SPT8
WD_LRWD1
PEP5_VPS11_N
WD40_like
PROPPIN
Beta-prop_DCAF12
B-prop_COPA_B_2nd
WDR54
Motif
Other DBs
NCBI-GeneID:
130800670
NCBI-ProteinID:
XP_057520241
LinkDB
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Position
15:complement(12904380..12921325)
Genome browser
AA seq
778 aa
AA seq
DB search
MMYGEPPQQSQQPPQQQQQHQPPQQQQQHQPPQQQHQPPPPPPQHMQHGPPPPHMHPPPH
FQHGPPPPPPPHQHQQQPPPMEFHRGPPPPPPPMMRPPSNTNLPPHPPPPDFHLPQQPSY
DSHADNSYAAKRMRKLTQRRAVDYTSTIVRYVQARMWQRDSRDRTVLQPTPAAAVDLLPP
AAYSDNPSTSFAAKFVHTSLNKNRCSINCVLWTPNGRRLITGSQSGEFTLWNGQSFNFEM
ILQAHEQAVRSMVWSHNENWMVTGDDGGSIKYWQNNMNNVKANKSAHKESVRDLSFCKTD
LKFCSCSDDTTVKVWDFARCQEEKSLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAK
SGRELCSFHGHKNTVLSVKWNENGNWVLTASKDQIIKLYDIRAMKELQSFRGHRKDVTTL
AWHPFHEEYFVSGSYDGSIFHWLVGHETPQIEVSNAHENAVWDLAWHPVGYILCSGSGDH
TTKFWCRNRPGDTGRDKFNVGYNQGYGEQIPAFGNRAAGNFSVAEPPTPGPFPPGLARNE
GTIPGVGAAMPLSIPPIDTSQAEQKQTLPAPPLPPGPHPSLLPNNQPQGYQHNPQQMPQQ
GVPQQMPSFPQPPPNMPQLPPPSHMSHLPHPHMPRPPPQMPPHSMPSNIPSSMPGSMPMP
PTSLPMPMPGPMGMQNATNQMVPQMQQGHFMNMNPMQSGSMPSGGMPPPGSFSNGMPNMQ
GPPNTSGSQMYPPGGPFNRPQGGQMPMMPGLGPYQPANQSGMPQPPLPPGPPPQQAQQ
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacggagaacctcctcagcaatcgcaacaaccaccgcaacaacaacaacaacac
caaccaccgcaacaacaacaacaacaccaaccaccgcaacaacaacaccaaccaccacca
cctcctccgcagcatatgcaacatggaccaccacctccacacatgcatcctccgccgcat
ttccagcacggtccaccacctccccctccgccgcatcagcatcaacaacaaccacctcct
atggagtttcataggggtccaccaccaccacctcctcctatgatgcgaccgccttccaat
actaatcttcctcctcatcctcctcctcctgattttcatctcccgcaacagccttcttat
gactctcatgctgataatagttatgctgcaaaaagaatgagaaaacttacacaaagacga
gctgttgactatacaagtacgattgttcgatatgttcaggctaggatgtggcagcgtgat
tcaagggaccggacagtattgcaacctactcctgcggctgctgttgatttgttgccaccg
gctgcttattctgataatccatcgacgagctttgctgcaaaatttgttcacacatctttg
aataagaaccgatgctctatcaattgtgttttgtggacgccaaatggaaggcgtctgatt
acaggctcacaaagtggcgaatttactctttggaatggtcaatcattcaattttgagatg
atcctccaggctcatgaacaagctgttaggtctatggtatggagtcataatgaaaattgg
atggttactggggatgatggaggctcaataaaatattggcagaacaatatgaataatgtc
aaggctaacaagtctgctcataaagagtccgtgcgggatctgagcttttgtaaaacagac
ttgaagttctgctcttgttctgatgataccactgtaaaagtttgggattttgcaaggtgt
caagaggagaagtcattaacaggccatggttgggatgtgaagagtgttgattggcaccct
acaaagtcgttactagtgtcaggtggtaaagataaccttgtaaaactttgggacgctaag
agtgggagggaactttgttcatttcatggccacaaaaatactgtgctcagtgtcaaatgg
aatgaaaatggcaattgggtactcaccgcttccaaggatcaaataattaagctttatgac
ataagggctatgaaggagcttcaatcatttcgtggtcacaggaaggatgtcactacattg
gcatggcatccatttcatgaagaatactttgtcagtggaagttatgatggctctattttt
cattggcttgtcgggcatgagactccacagattgaagtttcaaatgcccacgaaaatgct
gtatgggaccttgcttggcatcctgttggatatattttgtgcagtggaagtggtgatcac
acgacaaaattttggtgtagaaataggccaggggatactggtcgagataagtttaatgtt
ggctacaaccaaggctatggggaacaaattcctgcttttggtaatcgtgcagctgggaat
ttctccgtagcagaacccccaacaccgggaccatttccacctgggctggcacgaaatgaa
ggtacaattcctggtgtaggagctgccatgccactttccatcccgcctatcgatacttct
caggcagagcaaaagcagacccttccagcaccccctttgccacctggtccacatccttct
ctactacctaataatcaacctcaaggatatcaacataatcctcagcaaatgccacaacag
ggagtaccccaacaaatgccttcatttccacagccacctccaaatatgcctcagctaccg
cctccttcccatatgtcccaccttccacaccctcatatgcctcgtccccctcctcaaatg
cctccacacagtatgccttctaacatcccatcttcaatgcctggatccatgccgatgcca
cctacatcacttcccatgccaatgcctggtccaatgggaatgcagaatgctacaaatcaa
atggttccacaaatgcaacaagggcattttatgaatatgaaccctatgcagtcaggatct
atgcctagtggtggaatgccccctcctggaagtttctcaaatgggatgccaaatatgcag
ggcccgccaaatacaagtggctctcaaatgtatccacctggaggtccattcaaccgtcca
caaggtgggcaaatgccaatgatgcctggtcttggtccttatcagcctgctaatcaaagt
ggaatgccgcagcctcctctcccgcctggtccacctccacaacaagcacaacaatag
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integrated database retrieval system
