Amaranthus tricolor (tampala): 130801256
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Entry
130801256 CDS
T09367
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03030
DNA replication
atri03420
Nucleotide excision repair
atri03430
Mismatch repair
atri03440
Homologous recombination
atri03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130801256
03420 Nucleotide excision repair
130801256
03430 Mismatch repair
130801256
03440 Homologous recombination
130801256
03460 Fanconi anemia pathway
130801256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
atri03000
]
130801256
03032 DNA replication proteins [BR:
atri03032
]
130801256
03400 DNA repair and recombination proteins [BR:
atri03400
]
130801256
Transcription factors [BR:
atri03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130801256
DNA replication proteins [BR:
atri03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
130801256
DNA repair and recombination proteins [BR:
atri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
130801256
MMR (mismatch excision repair)
130801256
DSBR (double strand breaks repair)
HR (homologous recombination)
130801256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
zf-CCHC_6
CDC24_OB3
zf-CCHC_4
DUF223
Motif
Other DBs
NCBI-GeneID:
130801256
NCBI-ProteinID:
XP_057521044
LinkDB
All DBs
Position
15:complement(5344749..5348779)
Genome browser
AA seq
858 aa
AA seq
DB search
MAVTLTEGAIERMCNGDHDLKPVLQVADIRLVNTQNPSNATERYRLLLSDGVHLQQGMLA
TQRNELVKSGLLKKGSIVQLIQSVCNVIQGRTIIIIIELEVVQETCPTIGEPMQYVNGAA
RATAQMPSSAAQTGVIPGNAQQSNIHPPVSGSTPRPDGPGVLQQLKLERGAQMQSYGGSA
ANNPIPGHYSTNSGSPMHPKPVMANDNSVNSVAARPYGSFHNAKTDFSSAPSNAYARHQQ
PAFQQPASMYMNRGPVTKNEAPPRIIPIAALNPYQGRWTIKARVTAKGDLRHYNNPRGEG
KVFNFDLLDSDGGEIRVTCFNAVADQFYTLIEVGKVYMISKGSLKPAQKNFNHLANDHEI
LLDTTSIVQPCFEDDSIIPKQQFHFRPISDIENIENNGIVDVIGVVSSISPTSSIMRKNG
TETQKRNLQLKDMSGRSVEVTLWGSFCNSEGQTLQNMCDNGNFPVLALKSARVYEFNGKG
VGTLSTSQLFIEPDFPEAQRLKEWFDRDGKNLPSVSISRETTSLGARGDVRKTISQIKDE
KLGTSEKPDYIAVCGTISFIKMDNFCYAACPVKNAERQCNKKVTNNGDGTWWCDKCDQTV
NECDYRYILQLQIQDHTATTWATGFQEVGEEIMGIPAKDLYYLKNEAQDDNKVTEIARAA
VFTKYIFKLKVKEETFSDEQRVKSTIMKAEKVNFVAESRHLLELMSKMKVDDSGLAQANR
SGMGHVGISQPMVSGLSYGTNTGHSGRETGMHINNTSQLGNQYSGGYVSASSGVPMTCSN
CGGIGHNSSNCPSVLSNPGGIMNQIPSSNNGAQCFKCQKVGHFARDCPGLNAVPPAYDAG
NVGPDRYGGVQRQYVGGF
NT seq
2577 nt
NT seq
+upstream
nt +downstream
nt
atggcggttactctaacggaaggggcaattgaaaggatgtgtaatggcgaccatgatttg
aaaccagttcttcaagttgcagacattcgtcttgtcaatactcaaaaccctagcaatgct
actgaaagatatcggcttttattgtctgatggtgtgcatttgcaacaaggaatgcttgca
actcagcgaaatgaactagttaaatctggtttgttgaaaaagggttctattgttcagttg
attcaatccgtttgtaatgtcattcaaggccgaacgatcataattatcattgaacttgaa
gtggtacaagagacttgtcccacaataggagaaccaatgcaatatgtgaatggcgctgct
agagctactgctcaaatgccttcctctgcagctcaaactggggtgattcctgggaatgct
caacaatcaaatattcatccaccagtctctggttccacccctagacctgatggccctggg
gttttacagcagctgaagctggaacgtggtgctcaaatgcaatcttatggtggttctgct
gctaacaatccaattccaggacattattcaacaaatagtggatctcctatgcaccctaaa
ccagtgatggccaatgataattctgttaactctgtagctgctcgtccatacggatcattc
cataatgccaaaaccgatttctcaagcgctccttccaatgcttatgcaaggcatcagcaa
cctgcatttcagcaaccagcttcaatgtacatgaataggggtcctgtcactaagaatgaa
gcccctcctaggataattccaattgctgccctaaatccctaccaaggtcgatggacaatc
aaggcaagggtaacagcaaagggtgaccttcggcactataataatcctcgtggggagggg
aaagtatttaactttgatcttttagactctgatggtggagaaattcgagtcacctgtttt
aatgctgtggctgatcagttctacaccctgattgaggttggtaaggtatacatgatttcg
aaagggagcttgaaacctgctcagaagaatttcaatcatcttgctaatgatcatgagatc
cttttggataccacctctatagttcaaccttgttttgaagacgatagtataattcctaaa
cagcaatttcatttccgacctatcagtgacattgagaatattgagaacaatggtatcgtg
gatgtgattggtgtggtatcatcaatttctccaacatcctcaatcatgaggaaaaatgga
accgaaactcagaaaaggaatcttcagttgaaggatatgtctggcagaagtgttgaagtg
acattgtggggaagtttttgtaattcagaaggacagaccttgcaaaatatgtgtgataat
ggaaattttcctgttttagctctcaagtcagcaagagtttatgagttcaatgggaagggt
gtgggaactctttcgactagtcagttatttatagaacctgattttccagaggctcagagg
cttaaggaatggtttgatcgggatggaaagaaccttccatcagtttccatatcaagagag
acgacaagtttgggtgctaggggtgatgtacgtaagactatatcacagataaaggatgag
aagttggggacctctgaaaagcccgattatattgccgtttgtggcaccatatcatttata
aagatggacaacttctgttatgcagcatgccccgtcaagaacgctgaacgtcaatgcaac
aaaaaggttacaaataatggagatggaacatggtggtgtgataaatgtgatcagactgtt
aatgaatgtgattataggtatattcttcagttgcagatacaggatcatactgccaccacc
tgggcaacagggttccaagaagttggggaagaaattatgggcattcccgccaaagatttg
tattatttgaaaaatgaggcacaagatgataacaaagttacagaaatcgctagagcagct
gttttcacgaaatacatattcaagttgaaagtcaaggaagagactttcagtgacgaacaa
agagtcaagtcaaccatcatgaaagctgagaaggtgaattttgttgcagaatccaggcat
cttctggaattaatgagcaaaatgaaagtcgacgattctggtctggcacaagcaaataga
tctgggatgggtcatgttggaatcagccagccgatggtttcaggcctaagttatggaaca
aataccggacattctggtcgagaaacgggcatgcatatcaacaacacaagccagttgggg
aatcagtatagtggtgggtatgttagtgcttcttctggggtgccaatgacctgtagtaac
tgtgggggtattggccataattcatcaaattgtccaagtgttctcagcaatccaggaggc
attatgaatcaaatacccagcagtaacaatggtgcacagtgcttcaaatgtcaaaaagtc
gggcattttgcaagggattgccctggattaaatgctgtccctccagcttatgatgctggt
aatgtcggtcctgatagatacggtggcgtccaaagacaatatgttggaggtttctaa
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