Amaranthus tricolor (tampala): 130802367
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Entry
130802367 CDS
T09367
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03013
Nucleocytoplasmic transport
atri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130802367
03015 mRNA surveillance pathway
130802367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130802367
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130802367
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Nup35_RRM_2
RRM_5
RRM_8
Motif
Other DBs
NCBI-GeneID:
130802367
NCBI-ProteinID:
XP_057522327
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All DBs
Position
16:10573799..10582241
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AA seq
398 aa
AA seq
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MAKPSRAKGGSPSGSSSSRSRSRSYSGSDSRSASSRSRSGSRSRSFSSSSSRSRSVSSRS
ASPPQRKSPAEPSKRGRSPPTQAKKASPPRKALTIAESKVLYINKLTRNVNEGHLREIFS
NYGEVVNVELAMDRMVNLPKGYAYVEFKTRADAEKAQLYMDGAQIDGTIVVAQLTLPPSD
KVSPAKAAAPAKKDVPKGDGVDIGKDVPKRAREASPRPRRSPVPRRGVSPRRMDPLPRRR
GESPIRRESPFRRGESPKRRRPLSPRGRSPSPFRRPRSPVRGSPRRMRGSPVRRRSPLPQ
RRRSPPPRRARSPPRRSPVGRRRSRSPVRRIARSRSRSASPRRRPPVRRGRSSSGSLSPS
PRRGPRRISKSPRRPLKGRSRSRSSSRSRSSSGSPRKP
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccaagccgtgctaaagggggatctccatctggttcttcatcctcaaggtct
cgttcacgatcttactctggttccgattctcgcagtgcttcttctcgttctcgctctggt
tctcgttctcgctccttttcgtcttcttcgtctcgttctcgcagtgttagctctcgcagc
gccagccctcctcagcgtaaaagtcctgctgagccatcaaagcgaggccgttctccacca
acacaggctaaaaaggcttctccgcctagaaaagctttaactattgctgagtccaaggtc
ctctacatcaacaagctcacaaggaatgtgaatgagggtcatcttagagaaatttttagc
aactatggtgaagttgtgaatgtagagctggctatggatcggatggtcaatcttcctaaa
ggatatgcatatgtggagttcaagacaagagctgatgctgaaaaggcccaattgtacatg
gatggagctcaaattgatgggactattgttgtggctcaattaaccttaccaccgagtgat
aaggtatcacctgccaaagctgctgcacccgccaaaaaagatgttcctaaaggtgatgga
gtggatattgggaaggatgtaccaaaacgagcaagagaagcttctccacgtccaaggaga
tcccctgttcctcgtagaggtgtgtcacctagaagaatggatcctctacctcgtagacgt
ggagaatctcctatccgtagagaatctcctttccgccgaggagaatcaccaaaacgaagg
cgacctttgtctccgagaggccgatctccatctccatttaggcggccaagatcacctgtg
aggggatcccctcggaggatgcgaggaagtccggttcgtagacgatctcccttaccccaa
cgacgacgttccccacctcctagacgagcgcggagccctcctagaaggtctcctgtaggc
cgtagacgtagtcgctctcccgttcgaaggattgctcgatcacgctcaagatcagcctca
cctcgcagaagaccacccgttagaagaggtagatcgtcttcgggttctctatctccgagt
ccaagaaggggtccacgcaggatttcaaagagtccaagaaggccattgaaagggaggagc
aggagcaggagcagtagcagaagccgaagcagcagtggatcccctcgtaaaccataa
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