Amaranthus tricolor (tampala): 130802381
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Entry
130802381 CDS
T09367
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130802381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130802381
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130802381
mRNA degradation factors
5'-3' decay
Decapping complex
130802381
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
130802381
NCBI-ProteinID:
XP_057522345
LinkDB
All DBs
Position
16
Genome browser
AA seq
769 aa
AA seq
DB search
MEMLPTDSEEKEGEIRDSKLFDASQYAFFGNDIVEEVELGGLDDDEEILVGGIEDDYQLD
HEEVDGIESFSDIDDLAGALSKLNRTVSEPRPRLIADRASRESSSAADWAQDVDYSTWYD
QHAHHGDDSESKLWSSQPYTSACVAESKGLHRTASYPEPPPQLLPLRHQNLSSEPIPMPR
SSIPSFSGSRPHMLLPNNHTHPNNLYLSGGPHMTLQSQTSFSGPLPGLPHGSHLSTNLPH
FSPPDHSMDGRPPSQWLNHANLMNNMLQHQLPHQNGLRPQLITQQQQQANRLHHSIPQPY
GNITGVNSQLYGPHISQSPPIMNKFDGMMGLPDLRDRPRSSQKNRQSLRYPQPGFDTNGQ
RTDGGWPLFRSKYMSADEIENILRMQLAATHSNDPYVDDYFHQACLFKKSAGARLKHHFC
PTQLRDLPPRARPTDEPHPFLQVEALGRILFSSIRRPKPLLEVDPLNSTSPGCSDQKIIN
KPLEQEPLLAARITIEDCLCLLLDVDDIDRFLQFNQLPDGGAELRQRRQSQLEGLAASLQ
LVDPLDNSGQTPKDDLVFLRIISLPKGRKLLAKYLGMLTPGSDLLRIVCMAIFRHLRLLF
GILPSDPANALATSYLVNVVSSCVSKMDLYGLGACLAAVVCSSEQPPLRPIGSSAGDGAS
IVVKSVLDRAAELLKDPNTASSYNMPNPAFWKASFDEFFNLLLKYCLNKYDSIVQPLALS
NMASVGSDVAKAIKKEMPVELLRASLPHTTENQRKLLLDLAQRSVPLIG
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcttcctactgattctgaggaaaaagaaggtgaaatcagggattctaaatta
tttgatgcgtctcaatacgcgttctttgggaatgatattgttgaagaagtggaattggga
ggacttgatgatgatgaagaaatccttgtgggtggaattgaagatgattatcaattggac
catgaagaggttgatggcatagaatctttttcagatattgatgatcttgctggtgctttg
tcaaagctgaacaggacagtcagtgaaccaagacctcggcttattgctgatagggcgtct
cgagaaagttcttctgcagctgactgggcgcaggatgttgattattcaacctggtatgat
cagcatgcacaccatggagacgattctgaaagcaagttgtggtcttcacagccttatact
tctgcttgtgttgctgagtcaaagggattgcacagaactgcatcatatcctgagcctcct
cctcagcttcttcccctacgtcatcaaaatttatccagtgaaccaattcccatgcctagg
tcttccattccttctttttctggtagtaggccgcatatgcttttaccaaataaccacacg
catccaaacaacttgtacctttctggtggaccacatatgactctgcaatcacaaacatcc
ttttctggtcctttgcctggtttacctcatggttctcatctttctactaatttacctcat
ttctcccctcctgatcattctatggatggtcgccctcctagccaatggctaaatcatgct
aatcttatgaacaatatgttgcagcatcaattacctcatcagaatggattaagacctcag
ttgattactcaacagcagcagcaggcgaatagattgcaccattcaattcctcaaccttat
ggtaatataactggggtaaattctcaactatatggtcctcatatttctcaatcaccaccc
attatgaataaatttgatggcatgatgggacttcctgatctcagagatagacctagatca
tcacaaaagaaccgacaaagtttacggtacccccaaccgggttttgataccaatggccag
cgaactgatggtgggtggccgttattcaggtcaaagtatatgtcagctgatgaaattgag
aatattcttagaatgcagttggctgcaactcacagcaatgacccttatgtagatgattat
ttccaccaagcttgtttatttaaaaaatctgctggtgcaaggttgaaacatcatttttgc
cctacgcaactgagagatcttccaccacgagcacgtcctactgatgaacctcatcctttt
ctccaagtcgaggcattgggaaggattctattctcgtctatccgcaggccaaaaccactt
cttgaagttgatcctttgaattcaactagccctggctgcagtgatcaaaaaatcattaat
aaacccctcgaacaggaacctttgttggcagcaagaattactattgaggattgcctttgt
cttcttctagatgttgatgatatagaccgttttcttcaatttaatcaattaccggatggt
ggtgctgaattgagacaaagacgacaaagccaactggaaggattagcagcttctcttcag
cttgtagatccacttgacaacagtgggcaaactccaaaagatgatcttgtattcctacgt
ataatttctctccccaagggacggaaacttcttgcgaagtatcttggtatgcttactcct
ggaagtgatctcctccggattgtttgcatggcaattttccgtcatttgagattattgttt
ggtatccttccatctgatcctgcaaacgccttggcaacttcttaccttgtgaacgttgta
tcatcatgtgtcagcaagatggatctttatgggctgggtgcttgccttgccgcagttgtt
tgttcgtcagagcaacctccacttcgccccattgggagttctgctggagatggtgcctct
attgttgtgaagtctgtacttgatagagcagctgagctacttaaagaccctaatactgct
agcagctataatatgcctaatccagccttctggaaggcatcatttgatgaatttttcaac
ctactcctgaaatattgcttaaacaaatatgatagtattgtgcaaccactggcattgtcg
aacatggctagtgttggttctgatgtggcaaaagctattaagaaggaaatgcctgtagag
ctgctacgagcaagtcttcctcatactactgagaaccaacgcaagctcttactggatctt
gcacaacgttctgtgcctttaattggttag
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