Amaranthus tricolor (tampala): 130802817
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Entry
130802817 CDS
T09367
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri04120
Ubiquitin mediated proteolysis
atri04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130802817
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
130802817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
atri04121
]
130802817
Enzymes [BR:
atri01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130802817
Ubiquitin system [BR:
atri04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130802817
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
130802817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
zf-C3HC4_2
EIF3I
Beta-prop_DCAF4
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
zf-C3HC4
Beta-prop_TEP1_C
Beta-prop_HPS5
WD40_like
Beta-prop_CAF1B_HIR1
zf-RING_2
Beta-prop_EML
zf-C3HC4_3
WD40_RFWD3
Beta-prop_WDR75_1st
zf-RING_UBOX
Beta-prop_WDR35_TULP_N
zf-RING_5
Beta-prop_SCAP
zf-C3HC4_4
Beta-prop_DCAF12
YbfN
U-box
Prok-RING_4
Baculo_p24
zf-RING_10
DUF1664
zf-Nse
Motif
Other DBs
NCBI-GeneID:
130802817
NCBI-ProteinID:
XP_057522888
LinkDB
All DBs
Position
2:11538017..11553012
Genome browser
AA seq
676 aa
AA seq
DB search
MEERESSIGVGGGPLVPAVKPLSVVPLLPAPDSAHAGEQLEASPTETDKDLMCPICMQMI
KDAFLTACGHSFCYMCIITHLRNKSDCPCCGRHLTNNQLYPNFLLDKLLKKASVRQVSKN
ASPVEQLRRALLQGCEVSLKEVDTLISLLSEKKRKMEQEEAERNMQILLDFLYCLRKQKV
DELSEIQTDLQYIKEDISAVERHRMDLYRARDRYSVKLRMLSDDPTPKIRPSTADRNNGG
ISSGSRCSLGGLTAGSFQNKKMDVKAQGSHGQPRKDALSSGLDSQYISQSGLAVMRKKRI
HVQFGDLQECYLQKRRQLAGQPIKQEDRDNYMQREGYSTGLAEFQSVLSTFTRYSRLRVI
AELRHGDPFHSANIVSSIEFDRDDELFATAGVSRRIKVFDFSSVVNEPADAHCPVVEMST
LSKLSCLSWNKFSKNQIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSCTEPSML
VSGSDDCKVKVWCTKQEASVLNIDMKANICCVKYNPGSSYHIAVGSADHQIHYYDLRNVN
QPVHVFGGHKKAVSYVKFLSTTELASASTDSTLRLWDVKESLPLRTFRGHTNEKNFVGLS
VNSQYIACGSETNDVYVYHKEISRPVTCHKFGSPDVEDADEDAGAYFISAVCWKSDSPTL
LTANSQGTIKVLVLAA
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggaggagagagaaagctccattggagttggaggaggaccgttagttcctgcagtgaag
ccattatctgtagttccgctacttcctgcgccggattccgcccacgctggcgaacaattg
gaggcttcgccgactgaaaccgataaggatttgatgtgtccgatttgtatgcagatgatt
aaagatgcttttcttacggcttgtggacatagtttttgttacatgtgtatcatcactcat
cttcgtaataagagtgattgtccttgttgtggccgtcatcttactaataatcagctttac
cctaattttcttctcgataagctattaaagaaggcctcagttcgtcaagtttcgaaaaat
gcgtctcctgttgaacaattgcgccgcgcattattgcagggttgtgaagtttcgttgaaa
gaggtggacacccttatatcacttctttctgagaaaaagagaaagatggagcaagaagaa
gcagagagaaacatgcagattttgctagattttctgtattgcttgaggaagcagaaagtt
gatgagctcagtgagattcaaactgaccttcagtacatcaaagaggacatatccgctgtg
gagagacatagaatggatttatatcgtgcaagggaccggtactcagtaaaattgcgaatg
ctcagtgatgatcctacaccaaagatacggccttcaacagctgataggaataatggtgga
atttcctctggttcacgttgctcactaggagggttgactgcgggaagttttcagaataag
aaaatggatgtaaaggctcaaggctcccatgggcaaccgagaaaagatgctttgagtagt
ggtttggattcacagtacattagccaatcaggtttggctgtgatgagaaagaagagaatc
catgtgcagtttggtgacctgcaagagtgttacctgcaaaagcgtcgccagttggctggc
cagccaatcaagcaggaggatagggataattatatgcagagagaagggtatagcacaggt
cttgccgagttccaatctgtattgtctacctttactcgttacagccgcttgagagttatt
gctgaactcagacatggggacccttttcattctgccaatattgtatcaagcatagaattt
gaccgtgatgatgagttatttgccacagcaggagtttctcgaagaattaaagtctttgac
ttttcctcggttgttaatgagcctgcagatgcacactgtcccgttgttgagatgtcaact
ttgtccaaactcagttgtttgagctggaacaagttttccaagaaccaaatagctagtagt
gattatgaaggaatagttactgtatgggatgttacgacacgccagagtgtcatggagtac
gaagagcatgaaaagagggcttggagtgttgatttttcgtgtacagaaccttcaatgctt
gtatctggtagtgatgactgcaaggttaaagtgtggtgtacgaagcaggaagctagtgtg
cttaatattgacatgaaggcaaatatttgttgtgtcaagtacaatccaggatctagctat
catattgcagttggttctgctgaccatcagattcattattatgatttgaggaatgtaaac
cagccagttcatgtatttggtgggcataagaaagctgtttcatatgtcaaattcttatcg
actactgagcttgcttcggcatcaacagacagcacattgaggctgtgggatgtgaaggag
agcttaccgcttcgtacatttagaggtcatacgaacgagaagaactttgtaggtcttagt
gtaaacagtcaatacattgcctgtggaagtgaaactaatgatgtatatgtgtatcacaag
gaaatttctagacctgtaacttgtcataaatttgggtcaccggatgtcgaggatgctgat
gaagatgctggagcctatttcatcagtgctgtatgctggaagagtgatagtcctacactg
ttaactgccaacagtcaaggaacaattaaggtgctagtgcttgctgcttaa
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