Amaranthus tricolor (tampala): 130803472
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Entry
130803472 CDS
T09367
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130803472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130803472
03041 Spliceosome [BR:
atri03041
]
130803472
03009 Ribosome biogenesis [BR:
atri03009
]
130803472
03016 Transfer RNA biogenesis [BR:
atri03016
]
130803472
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130803472
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
130803472
Spliceosome [BR:
atri03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
130803472
Complex C
U4/U6.U5 tri-SnRNP related factors
130803472
Ribosome biogenesis [BR:
atri03009
]
Eukaryotic type
Pre-60S particles
Helicases
130803472
Transfer RNA biogenesis [BR:
atri03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
130803472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ABC_tran_CTD
Motif
Other DBs
NCBI-GeneID:
130803472
NCBI-ProteinID:
XP_057523563
LinkDB
All DBs
Position
17:13034550..13049491
Genome browser
AA seq
1045 aa
AA seq
DB search
MAESHSTAETSSTMAEPPSTTTETPSAMEELPSTTEPTSDAPIPVQQNLGKRKQSEFEQP
PQSSHENTQKIEQHTQKNPDQQSSKRRNSTRTCVHEVAVPKDFVSSKDSSIYGTLANPNY
TGPMAKTYVFTLDPFQQVSISCLERKESVLVSAHTSAGKTAVAEYAIAMAFREKQRVIYT
SPLKALSNQKYRELNQEFSDVGLMTGDVTIAPNASCLVMTTEILRGMLYRGSEVLKEVAW
VIFDEIHYMKDRERGVVWEESIVFLPAQIKMVFLSATMSNATEFAEWICNIHKQPCHVVY
TDFRPTPLQHYVFPVGGSGLYLVVDENEQFREDNFMKLQDTFVKPGSGMKAAAAKASGRI
AKAGSGPKGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNSQEEKDIVE
QVFKNAILCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEGLVKALFA
TETFAMGLNMPAKTVVFTAVKKFDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMIDE
QMEMNVLRDMVLGKPAPLVSTFRLCYYSILNLMCRAEGQFTAEHVIRNSFHQFQYEKTLP
EIEKKIEKLEQEAAALDASVESEVAEYHKLRLDLALLEKKMMSEITRPERVLYYLLPGRL
VKVRVGGTDWGWGVVVNVVKKATATASAGTMPSGGSYIVDTLLHCSPGKTENGSRPKPCP
PRPGEKGEMHVVPVQLPLISSLSKLRISIPPDLRPIDARQSILLAVQELERRFPQGLPKL
NPVKDMGIEEKEIIELVSQIEELEKKLFSHPMHKSQDAHQVKCFERKAQVNYEIQQLKTK
MRESQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAASLIDTGDELLVTELMFNGTFN
DVDHHQLAALASCFIPVDKSNEQIHLRAELAKPLQQLQDSARKIAQIQHDCGLDVNVEEY
VESTAKPYLMDVIYCWSKGANFSEVIQMTDIFEGSIIRLARRLDEFLNQLKAAASAVGEA
DLENKFGDASASLRRGIMFANSLYL
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatctcattcaacggcagaaacgtcttcaacaatggcggaacctccttcgaca
actacagaaacaccctcagcaatggaggaacttccttcaacaacagaacctacctcagat
gctcctattccagtacaacaaaacttaggaaagagaaaacaatcagaatttgaacaacca
ccacaaagctcacacgaaaacactcaaaaaattgagcaacatactcagaaaaatccagac
caacaaagttcaaaacgaagaaactcaactcggacatgcgtacacgaagtagcagtaccg
aaagattttgtttcaagcaaagattcatccatttatggaactttagcaaaccctaactac
accggtccaatggcgaaaacctacgttttcactctcgatccctttcaacaagtctcaata
tcctgtttagagcgaaaagaatcagtcctagtctctgcgcacacttctgctggaaaaact
gctgtagctgagtacgcaattgctatggcattccgagaaaagcagcgtgtaatatacaca
tcaccgttgaaagcattgagcaatcaaaagtacagagaattgaatcaggaattcagtgat
gtaggtcttatgacaggtgatgttactatcgctcctaatgctagttgtttagtgatgacc
acagagattcttcgtggaatgttatacaggggatcagaggttttgaaagaagttgcttgg
gttatttttgatgagattcattatatgaaggatagagaaagaggtgttgtttgggaagag
agtattgttttcttgcctgctcaaattaaaatggtgtttttgtctgccactatgtcgaat
gctactgagtttgctgagtggatttgtaatattcataagcaaccttgccatgttgtttat
acggattttcggcctacacccttgcagcattatgtgtttccagttggtggttcagggttg
tacttggtggtggatgagaatgagcagtttagagaggataattttatgaagcttcaagat
acgtttgtgaagcctggaagcgggatgaaggcggctgctgctaaggctagtggaaggatt
gcaaaagctggctctggacctaaagggggttctgatatttttaagattgtcaagatgatc
atggaacgcaaatttcagcctgttattgtatttagtttcagtagaagggagtgtgaacaa
catgcaatgtcaatgtcaaagcttgactttaattcacaagaagagaaagatattgtagag
caggtttttaaaaatgcgattctttgcttgaatgaggaagacaggagccttcctgctatt
gagttgatgttacctcttcttcaacggggcattgctgtacatcattctgggcttctccca
attattaaagaattagtggagcttctttttcaagaagggcttgtgaaagctttatttgcc
accgaaacttttgcaatgggtttaaatatgcctgcaaaaacagttgtttttactgcagtt
aagaaatttgatggtgatagccatcgttatattggatccggcgagtatattcagatgagt
ggaagagcaggtcgtcgtgggaaggatgatcgaggcatttgcattataatgattgatgag
cagatggaaatgaatgttctgagagatatggtgttgggtaagccagctcctcttgtcagc
acttttagattgtgctactactcgattttgaatttgatgtgtcgagccgaaggccaattt
actgctgaacatgttattagaaattcttttcatcagtttcagtacgagaagactttgcct
gaaattgaaaaaaagattgagaagcttgagcaggaagctgccgcgcttgatgcttctgta
gagtctgaagttgctgagtaccataagctaaggcttgatttagctctacttgagaagaag
atgatgtcagagataacaaggccagagagggtcctttattatcttcttcctgggaggctg
gttaaggttcgtgttggaggaactgattggggttggggagttgtggtcaatgtggtgaaa
aaggccactgccactgcaagtgcaggaactatgccatcgggtgggagctatatagttgat
actctgcttcattgctcccctggtaaaactgagaatggttctaggcctaaaccatgcccc
cctcgtcctggggaaaagggtgaaatgcatgtggtccctgtacaattgcccttaatatct
tctctcagtaagctccggatatctatcccccctgatctacgccctattgatgccagacaa
agcatacttttagctgtacaggagttggaaagacggtttcctcaaggtcttccaaagctt
aatcccgtgaaggatatgggtattgaagagaaggaaattattgagttggtcagtcaaatt
gaagagcttgagaagaaattgttttcgcatcctatgcacaagtctcaagatgcacatcag
gtcaagtgtttcgaacgcaaagctcaagtgaattatgaaattcaacagttgaaaactaag
atgcgtgagtctcagcttcaaaagtttcgggatgagcttaaaaatcggtcacgtgtcttg
aagaagctaggccatattgatgctgatggtgtagtccagttgaaaggacgagctgcatcg
ttgatagacactggtgatgaacttcttgtgacagagctgatgttcaatgggacatttaat
gacgtggatcaccatcaacttgctgctcttgcaagctgttttatcccagtagataaatcc
aacgagcagattcatctacgagcagaacttgcaaaaccattacagcaactccaagacagt
gcaagaaaaatcgctcagatacaacatgattgtggactggatgtaaatgtggaagaatat
gttgaatctactgcaaaaccatacttgatggatgtgatatactgttggtctaagggagct
aatttttctgaggttatacaaatgactgatatatttgagggaagtatcataagattggcg
agaaggctggatgagttcttgaaccagttgaaagctgcagcaagtgcagtgggagaggct
gatctggagaacaagtttggtgatgctagtgccagcctccgtcgaggtattatgtttgct
aactctctttacttgtag
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