Amaranthus tricolor (tampala): 130804094
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Entry
130804094 CDS
T09367
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03013
Nucleocytoplasmic transport
atri03015
mRNA surveillance pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130804094
09122 Translation
03013 Nucleocytoplasmic transport
130804094
03015 mRNA surveillance pathway
130804094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130804094
03041 Spliceosome [BR:
atri03041
]
130804094
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130804094
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130804094
Spliceosome [BR:
atri03041
]
Complex C
Other components
EJC/TREX
130804094
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130804094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
130804094
NCBI-ProteinID:
XP_057524405
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All DBs
Position
17:16494439..16500715
Genome browser
AA seq
428 aa
AA seq
DB search
MGETRENDAYEEELLDYEEEEEKVPDSGAAKTNGEAGKKGYVGIYSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPGIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKTIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLARYKGFKDGKQRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaacaagagaaaacgatgcttatgaagaggagcttcttgattacgaagaggaa
gaagagaaggttccagattccggagctgctaaaaccaatggtgaagccgggaaaaagggt
tatgttggaatctatagttcgggttttagagacttccttttgaagccggaacttctgcgt
gcaattgttgactctggttttgagcatccatccgaagtgcaacatgagtgtattccccaa
gctatattgggcatggatgtaatatgccaagcaaaatctggtatggggaagactgccgta
tttgttctatcaaccttacagcagattgatcctgtggctgggcaagttgctgcacttgtt
ctttgtcacaccagagagctggcatatcagatctgccacgagtttgagaggttcagcaca
tatttgccgggcattaaagttgctgtcttctatggtggtgtcaacatcaaaatccacaag
gacctgctcaagaatgaatgcccacatattgttgtgggtacacctggaagagtacttgca
ctagctagagacaaggatctgtcactaaagaatgtccgtcattttattcttgatgaatgt
gataaaatgctggagtcccttgacatgaggagagatgttcaggagatctttaaaatgact
cctcatgacaagcaagtgatgatgttttctgcaactctcagcaagacaatccgtcctgtt
tgcaagaaattcatgcaagatccgatggaaatatatgttgatgatgaagccaaattgacc
ctccatggtcttgtacagcactacatcaaattgtccgagctggaaaaaaatcgcaagctg
aatgaccttttggatgctctggattttaaccaagttgtcatctttgtgaagagtgtaagt
agggctgccgagctgaacaaacttctagtggagtgcaacttcccttcaatctgcatccac
tctggcatgtcccaggaagaaagacttgctcgatacaagggctttaaagatgggaagcaa
agaatcttagttgcaactgatttggttggcagaggaattgacattgaaagagttaatata
gttattaattatgacatgccagattctgcggacacatacttgcatcgggttggcagagct
gggaggtttggaacaaaagggcttgctataacatttgtggcctctgcttctgattctgat
gttctcaatcaggttcaggagagatttgaggtcgacataaaggagcttcctgagcagatt
gacacctctacatacatgccttcatag
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