Amaranthus tricolor (tampala): 130804195
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Entry
130804195 CDS
T09367
Name
(RefSeq) putative cyclic nucleotide-gated ion channel 8
KO
K05391
cyclic nucleotide gated channel, plant
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
130804195
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
atri04040
]
130804195
Ion channels [BR:
atri04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
130804195
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GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
IQ
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
130804195
NCBI-ProteinID:
XP_057524536
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Position
17:complement(3905566..3913888)
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AA seq
735 aa
AA seq
DB search
MWGFKSQFIGGQREKFVRLNKMDSYSSSTSTANGFGGFNIEGIKRTIYGAYNPSMLATMG
PQGLKTFGKSLKSGVTRAIFPEDLKVSDKKIFDPQDRSLILWNKLFVISCIIAVSIDPLF
FYLPIVEHRKDCLGMDFSLAATTTTLRTMVDAFYIIHVIFQFRTAYIAPSSRVFGRGELV
IDTKEIAKRYLFRYFIVDVLAVLPLPQIVVLKYLVKAQGKAILETKQWLQVIIFVQYIFR
FGRFYPLTSDLKKTAGGFAESAWLGAAYYLLWYLLSSHIAGALWYLLAVERIDTCWQKAC
QSQGDKCNEDFLYCGKHDMDGSYETWRNISVEVLGKMCSVEDIGPTSFNFGIYTQAMSSK
IVESQTFFRKFCYCLWWGLQNLSTLGQGLQTSTYPGEIIFSICLAISGLILFALLIGNMQ
TYLQSLTVRLEEMRIKRRDSEQWMHHRLLPQELRERVRRYNQYKWLETRGVDEESLVQSL
PKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEKTFIVREGDPVDEMI
FIIRGHLESVTTDGGRSGFYNRGLLKEGDFCGEELLTWALDPKSIINLPLSTRTVKALTE
VEAFALRAEELKYVASQFRRLHSKQVQHTFRFYSQQWRTWAACFIQAAWKGHLRRKIAEI
RRFEDEDIMFDDDDDGEEKCLIKTRRFGDSSFKTTLYVSRFVRNALRGVHRLRSGSSTTE
LSLQKPHEPDFSSLD
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtggggtttcaagtctcaattcattggtggtcaaagagaaaagttcgttaggctaaac
aaaatggactcatactcatcatcaacaagcacagccaatggatttggaggattcaacata
gaaggaataaaaagaacaatatatggagcatataacccatcaatgttagcaacgatgggc
ccacaaggactaaaaacatttggtaaatcactaaaatcaggagttactagggcaatattc
cctgaagatcttaaagtatcagacaaaaaaatatttgatcctcaagatagatcacttatt
ctttggaacaaactatttgttatatcttgtatcattgcagtttccattgatcctttgttc
ttttatcttccaatcgtcgaacatcgaaaggattgtttagggatggatttctctttagct
gctactaccactactttaaggactatggttgatgcattttatataattcatgtcattttt
cagtttaggactgcctatattgcaccatcttctagggtttttggaagaggtgaacttgtg
attgatactaaggagattgctaaaagatacttgtttcgttattttattgtggatgttttg
gctgttcttcctctaccccaaattgtggtgttaaaatacctagttaaagcacaaggcaaa
gctatactggaaacaaaacagtggttgcaagtaatcatatttgttcaatacatatttaga
tttggaaggttttatcctttaacttctgatctaaaaaagactgctggcggttttgcggaa
agtgcttggcttggtgctgcttattacttgctgtggtacttgctctctagtcatattgca
ggagcgttatggtatttgttggcagtggaacgaattgatacatgttggcaaaaggcatgt
caaagtcaaggagataagtgcaatgaagatttcttatattgtggtaaacatgatatggat
ggttcttatgagacatggagaaatattagtgtggaagtacttggaaaaatgtgttctgtg
gaggatattggacctacatccttcaactttggaatctatacacaagctatgtcatccaag
attgttgaatctcaaaccttcttcagaaaattttgttactgcctctggtggggcttacaa
aatctaagtacactaggccaagggctacaaactagtacgtatccgggagagatcatattt
tccatatgtcttgcaatatctggtctcattctttttgcacttctgattggaaatatgcag
acttatcttcaatcgctgactgtaaggcttgaggagatgagaattaaaagacgtgattca
gagcaatggatgcatcatcgtttacttccccaagaacttagggagcgagttagacgttat
aaccaatacaaatggttggaaacacgaggagttgatgaagaaagccttgttcagagtcta
ccaaaagatcttaggagggacattaaacgacatctttgtttaaatttagttagaagagtt
ccgttatttgcaaacatggacgagagattactagacgcaatatgtgaacgtctaaaacca
agcctatacacagaaaaaacgttcatagtccgagaaggagacccagtagacgaaatgatc
ttcatcataagaggacacttagaaagtgtaacaaccgatggaggaagaagtggattttac
aacagaggattactaaaagaaggagatttttgtggggaagaacttctaacatgggcatta
gacccaaaatccataatcaacctacccttatccacaaggacagttaaggcactaacagaa
gtagaagcctttgcattaagggcagaagaattaaaatatgttgcaagtcagtttagaaga
cttcatagtaaacaagttcaacatacatttagattttattcacaacaatggaggacttgg
gctgcttgttttattcaagctgcatggaaaggtcatttgagaagaaaaattgctgagatt
cgaagatttgaagatgaagatataatgtttgatgatgatgatgatggggaagagaaatgt
ttgattaaaacgcgacgttttggggattctagttttaaaacgacgttgtatgtgtcgagg
tttgttaggaatgctcttaggggtgttcataggcttcgaagtgggtctagtactactgaa
ttgtcgttgcagaagcctcatgaacctgacttttctagccttgattga
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