Amaranthus tricolor (tampala): 130804496
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Entry
130804496 CDS
T09367
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130804496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130804496
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
130804496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
RRP7
Motif
Other DBs
NCBI-GeneID:
130804496
NCBI-ProteinID:
XP_057524935
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All DBs
Position
17:complement(7602306..7618773)
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AA seq
928 aa
AA seq
DB search
MEIDPLQSDTDTLVQKSETFKNLSNGSISSYISKLSGSSRVLPSEKDFHFYYNFDEFRNP
INEISSKSQSMIQQIDAAMQLWGGRETEFPQEFDDESYDWLVNVNDEIFERFDMSMDEFS
RLRKAEEEAARARPTIDENGFQLVSGHKKQAPVHCGMTEKEENVSSSTVRVVERDKKTEG
PKSKVPFHIPTIQKPQEQYNILVNNSNQPFQHVWLERSEDGSRFIHPLEKLSVHDFVECN
IESLESMKPLQLESTPFKLVEEVKDLKELAAKLRSVNEFSVDLEHHQYRSFQGLTCLMQI
STRMEDFVVDTLKLRVHIGPYLREMFKDPTKRKVMHGADKDILWLQRDFGIYVCNLFDTG
QASRVLQMERNSLEHLLQHFCGVNANKQYQNADWRLRPLPHEMIKYAREDTHYLLYIYDL
LKMRLLSESTDPKNSKELLLEVYKRSYDICMQLYEKELLTDTSYLYIYGVQATDLDAQQL
SITAGLCEWRDTIARAEDESTGYVLPNKILLEIAKQMPHTTKKLRHLIKSKHPYVERNLG
SVVNIIRRCVENASSFEAAAQQLKDGRLKMAPKLNSAETDIDNDGEANVSQLKFSPDYVH
MKEESLKFADHDPKLRKDKVGFSLEEISQNRNMAIDANDGIVVPECHREQQAFSSQKSVP
EATVQLLKKPGRAFGALLGSSSKKKTGLNKDGDKLKEIKSSVNLPFYHSFSYNWEQELKQ
EPKQTPKEPNETSNTPLMGECPCEADLSIKSKDASTDDGHPFASVSNSKLDDIILLTGDS
SDKELTDSSARDQICAKLNDQVASEQELVAPDVDKDKDDEQISLLDLSSSFQKCLQSVND
NKASKHETKFKETSSSQFKPFDYEAARKGLKFSEVAEKELKTGDKVDNRFGKKKTVVSNG
LKIDEGILPEGKKRQAFPSSGNRSATFR
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggaaattgatccattacagtcggataccgatacactcgtgcagaaatcagaaaccttc
aaaaatctttcaaatggctcaatatcttcttatatttcgaaactttcaggatcatctagg
gttttaccttcagagaaagactttcacttctactacaattttgacgagtttagaaatcca
attaatgaaattagttctaagtctcagtctatgatccaacaaattgatgcagcaatgcag
ctgtggggtgggagagaaacagagtttcctcaagaatttgatgatgaatcgtatgattgg
ctcgtaaatgttaatgatgaaatttttgaaaggtttgatatgtcaatggatgagttttcg
aggttgcgaaaggcagaagaagaagcggctagggctcgaccaactattgatgagaatgga
tttcaattggtttctgggcacaagaaacaggctcctgttcattgtgggatgacagaaaag
gaggaaaatgtatcttcttctactgtgcgggttgtcgagagggataaaaagacggaagga
ccaaagtctaaggttccgtttcatataccgacgatccagaaaccgcaggagcagtacaac
atattggtaaataactctaatcagccatttcaacatgtatggttggagaggagtgaagat
ggctcaaggttcattcaccctttggaaaagctatcagttcatgattttgtggaatgtaat
attgagtctcttgagtcaatgaagccacttcaactagaatctactccatttaaattggtc
gaggaagtgaaggatttaaaggagttagctgctaaactacggagcgtgaatgagttttct
gtcgatctggaacaccatcagtaccggtcatttcaaggattgacttgcttgatgcaaata
tctaccagaatggaagattttgttgttgatactttgaaattgcgagttcatatcggtcca
tatttgagggaaatgttcaaggatcctactaagaggaaggtaatgcatggagctgacaag
gatattttatggcttcagcgagactttggcatttacgtatgcaatttatttgatacaggc
caggcttcaagagtgctacaaatggagagaaacagtttggagcatcttcttcagcatttc
tgtggagttaatgcaaacaaacaataccaaaatgctgattggaggttgcgtccacttcca
catgagatgataaagtatgccagagaagacacgcactatctattgtatatatatgatttg
ttgaaaatgagactgctttcagagtcaacggatcctaaaaactctaaagagctcctacta
gaggtttacaagcgcagttatgatatatgcatgcaactttatgagaaagagctactgact
gatacttcatatctttacatatatggtgtccaggcaactgatcttgacgctcaacagctg
tccattactgctggcctctgtgagtggagggacacaattgcccgtgcagaggatgaaagc
actggttatgttttgccaaataaaatactgttggaaattgccaagcagatgcctcatacg
acaaaaaagttacgacatctgataaaatcaaagcatccatacgtggaacgtaatctcggt
tctgtggtcaacatcatcaggcgttgtgttgaaaatgcttcgagttttgaagcagcagct
cagcaactgaaggatggtcgacttaaaatggcacccaaattaaatagtgctgagactgat
attgacaatgatggtgaagctaatgttagccagcttaaattttctccagattatgtgcat
atgaaagaagaaagtttgaagtttgctgaccatgatcctaaattaaggaaggataaagtt
ggcttttcattggaagagataagtcagaacaggaatatggctatagatgctaatgatgga
attgttgttcctgaatgtcatagagaacagcaggccttttccagtcaaaaaagtgttcct
gaagctactgtccagctgctaaagaagccaggtcgtgcttttggggcacttctggggagt
tcttccaaaaagaaaactgggctgaataaggatggagacaagttgaaggagattaaatca
tctgtaaatcttccgttttaccactcattttcatacaactgggagcaggaattgaagcaa
gagcctaaacaaacaccgaaagagccaaatgaaacctctaatactccgctcatgggggag
tgcccttgtgaagctgatttgagcatcaagtcaaaagatgcgtcaactgatgatgggcac
ccttttgcgtcagtgtcaaactccaaattagatgatattatcttactgactggtgattct
agtgacaaagaactcactgatagttcagctcgagatcaaatttgtgcgaaattgaatgat
caagttgcttctgaacaagaattggttgccccggacgtggacaaagacaaggatgatgag
cagatttcgttattggatttgtcatctagtttccagaaatgcttgcagtccgttaatgac
aataaagccagcaaacatgaaacaaagttcaaagaaactagcagctctcagtttaagcca
tttgattatgaagctgcacggaaagggttgaagtttagtgaggttgcagaaaaagaatta
aaaactggtgataaagttgacaatcgctttggcaagaaaaaaacggttgtcagcaatggg
ctcaagatagacgaaggtatacttcctgaaggtaaaaaacgtcaagcttttccttccagt
ggcaatcgaagtgctacattcaggtga
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