KEGG   Amaranthus tricolor (tampala): 130804496
Entry
130804496         CDS       T09367                                 
Name
(RefSeq) protein RRP6-like 2
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
atri  Amaranthus tricolor (tampala)
Pathway
atri03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:atri00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    130804496
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:atri03019]
    130804496
Messenger RNA biogenesis [BR:atri03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     130804496
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC PMC2NT RRP7
Other DBs
NCBI-GeneID: 130804496
NCBI-ProteinID: XP_057524935
LinkDB
Position
17:complement(7602306..7618773)
AA seq 928 aa
MEIDPLQSDTDTLVQKSETFKNLSNGSISSYISKLSGSSRVLPSEKDFHFYYNFDEFRNP
INEISSKSQSMIQQIDAAMQLWGGRETEFPQEFDDESYDWLVNVNDEIFERFDMSMDEFS
RLRKAEEEAARARPTIDENGFQLVSGHKKQAPVHCGMTEKEENVSSSTVRVVERDKKTEG
PKSKVPFHIPTIQKPQEQYNILVNNSNQPFQHVWLERSEDGSRFIHPLEKLSVHDFVECN
IESLESMKPLQLESTPFKLVEEVKDLKELAAKLRSVNEFSVDLEHHQYRSFQGLTCLMQI
STRMEDFVVDTLKLRVHIGPYLREMFKDPTKRKVMHGADKDILWLQRDFGIYVCNLFDTG
QASRVLQMERNSLEHLLQHFCGVNANKQYQNADWRLRPLPHEMIKYAREDTHYLLYIYDL
LKMRLLSESTDPKNSKELLLEVYKRSYDICMQLYEKELLTDTSYLYIYGVQATDLDAQQL
SITAGLCEWRDTIARAEDESTGYVLPNKILLEIAKQMPHTTKKLRHLIKSKHPYVERNLG
SVVNIIRRCVENASSFEAAAQQLKDGRLKMAPKLNSAETDIDNDGEANVSQLKFSPDYVH
MKEESLKFADHDPKLRKDKVGFSLEEISQNRNMAIDANDGIVVPECHREQQAFSSQKSVP
EATVQLLKKPGRAFGALLGSSSKKKTGLNKDGDKLKEIKSSVNLPFYHSFSYNWEQELKQ
EPKQTPKEPNETSNTPLMGECPCEADLSIKSKDASTDDGHPFASVSNSKLDDIILLTGDS
SDKELTDSSARDQICAKLNDQVASEQELVAPDVDKDKDDEQISLLDLSSSFQKCLQSVND
NKASKHETKFKETSSSQFKPFDYEAARKGLKFSEVAEKELKTGDKVDNRFGKKKTVVSNG
LKIDEGILPEGKKRQAFPSSGNRSATFR
NT seq 2787 nt   +upstreamnt  +downstreamnt
atggaaattgatccattacagtcggataccgatacactcgtgcagaaatcagaaaccttc
aaaaatctttcaaatggctcaatatcttcttatatttcgaaactttcaggatcatctagg
gttttaccttcagagaaagactttcacttctactacaattttgacgagtttagaaatcca
attaatgaaattagttctaagtctcagtctatgatccaacaaattgatgcagcaatgcag
ctgtggggtgggagagaaacagagtttcctcaagaatttgatgatgaatcgtatgattgg
ctcgtaaatgttaatgatgaaatttttgaaaggtttgatatgtcaatggatgagttttcg
aggttgcgaaaggcagaagaagaagcggctagggctcgaccaactattgatgagaatgga
tttcaattggtttctgggcacaagaaacaggctcctgttcattgtgggatgacagaaaag
gaggaaaatgtatcttcttctactgtgcgggttgtcgagagggataaaaagacggaagga
ccaaagtctaaggttccgtttcatataccgacgatccagaaaccgcaggagcagtacaac
atattggtaaataactctaatcagccatttcaacatgtatggttggagaggagtgaagat
ggctcaaggttcattcaccctttggaaaagctatcagttcatgattttgtggaatgtaat
attgagtctcttgagtcaatgaagccacttcaactagaatctactccatttaaattggtc
gaggaagtgaaggatttaaaggagttagctgctaaactacggagcgtgaatgagttttct
gtcgatctggaacaccatcagtaccggtcatttcaaggattgacttgcttgatgcaaata
tctaccagaatggaagattttgttgttgatactttgaaattgcgagttcatatcggtcca
tatttgagggaaatgttcaaggatcctactaagaggaaggtaatgcatggagctgacaag
gatattttatggcttcagcgagactttggcatttacgtatgcaatttatttgatacaggc
caggcttcaagagtgctacaaatggagagaaacagtttggagcatcttcttcagcatttc
tgtggagttaatgcaaacaaacaataccaaaatgctgattggaggttgcgtccacttcca
catgagatgataaagtatgccagagaagacacgcactatctattgtatatatatgatttg
ttgaaaatgagactgctttcagagtcaacggatcctaaaaactctaaagagctcctacta
gaggtttacaagcgcagttatgatatatgcatgcaactttatgagaaagagctactgact
gatacttcatatctttacatatatggtgtccaggcaactgatcttgacgctcaacagctg
tccattactgctggcctctgtgagtggagggacacaattgcccgtgcagaggatgaaagc
actggttatgttttgccaaataaaatactgttggaaattgccaagcagatgcctcatacg
acaaaaaagttacgacatctgataaaatcaaagcatccatacgtggaacgtaatctcggt
tctgtggtcaacatcatcaggcgttgtgttgaaaatgcttcgagttttgaagcagcagct
cagcaactgaaggatggtcgacttaaaatggcacccaaattaaatagtgctgagactgat
attgacaatgatggtgaagctaatgttagccagcttaaattttctccagattatgtgcat
atgaaagaagaaagtttgaagtttgctgaccatgatcctaaattaaggaaggataaagtt
ggcttttcattggaagagataagtcagaacaggaatatggctatagatgctaatgatgga
attgttgttcctgaatgtcatagagaacagcaggccttttccagtcaaaaaagtgttcct
gaagctactgtccagctgctaaagaagccaggtcgtgcttttggggcacttctggggagt
tcttccaaaaagaaaactgggctgaataaggatggagacaagttgaaggagattaaatca
tctgtaaatcttccgttttaccactcattttcatacaactgggagcaggaattgaagcaa
gagcctaaacaaacaccgaaagagccaaatgaaacctctaatactccgctcatgggggag
tgcccttgtgaagctgatttgagcatcaagtcaaaagatgcgtcaactgatgatgggcac
ccttttgcgtcagtgtcaaactccaaattagatgatattatcttactgactggtgattct
agtgacaaagaactcactgatagttcagctcgagatcaaatttgtgcgaaattgaatgat
caagttgcttctgaacaagaattggttgccccggacgtggacaaagacaaggatgatgag
cagatttcgttattggatttgtcatctagtttccagaaatgcttgcagtccgttaatgac
aataaagccagcaaacatgaaacaaagttcaaagaaactagcagctctcagtttaagcca
tttgattatgaagctgcacggaaagggttgaagtttagtgaggttgcagaaaaagaatta
aaaactggtgataaagttgacaatcgctttggcaagaaaaaaacggttgtcagcaatggg
ctcaagatagacgaaggtatacttcctgaaggtaaaaaacgtcaagcttttccttccagt
ggcaatcgaagtgctacattcaggtga

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