Amaranthus tricolor (tampala): 130804737
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Entry
130804737 CDS
T09367
Name
(RefSeq) uncharacterized protein LOC130804737 isoform X1
KO
K06100
symplekin
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130804737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130804737
03019 Messenger RNA biogenesis [BR:
atri03019
]
130804737
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130804737
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
130804737
U7-dependent histone pre-mRNA processing factors
130804737
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
HEAT
HEAT_EZ
TPR_DNAAF5
CARD_2
CRM1_C
Motif
Other DBs
NCBI-GeneID:
130804737
NCBI-ProteinID:
XP_057525273
LinkDB
All DBs
Position
17:complement(5259363..5287807)
Genome browser
AA seq
1346 aa
AA seq
DB search
MVGIMATDCGDKIRSLIASVTFAADNPSKFQNLHQLKHQLLKSVQDSSISLSDFLPSLLK
LLSDDFSPVRKCISEVIGEIGLKHLEFLPETIPALLTVVDDDTPAVARQAITSCTNIFCC
TLEKIAIQGLHERKLDDLLESTWEWMLKVKEKIYTIAFESGSDGIRLLALKFVASIILIY
TPDPNGGTEPPTHPISDSDDKVVGKEMGFNISWLRKGHPFLKLGELSVEATQSLGLLLGQ
LRLPMVKSLSTSMMVVLINCLSAIAVKRPSFYGRILPVLLGLDPSNSVVKELHAYGVQNA
LKTAFLSCLKCAHPSATPWRDRLLDALREMGVGDLAEQALERVSNINGNVKQETPISIVK
EELALEHHDAAHTKVGRKRSSDMDVGNRNEDDDTPGKRARSVHIVSEELTDKSNIPYKAV
EVKPDTTGKANISNEDDSAPVRHLIGLFGDLVAQGEKAAASLQILISGISADLLADVVIA
NLRNLPSTCPMIEGDELQANIGLQQSSVDTESPFRQISSFLTNAFHCSDSEQTSAMDAKQ
LVSYDIEHPVLQDSHAMDIADNNVACTVSNKSTELVDSDIPCAVVSDNLLEIPKVSAGTS
ELQDVGPTDTAIPGLDNAHRVGLRDFVASSSLASTDLDDGSQDQATSVGRRSIAESLPSV
STEKSEELSSRAAAVDANIGMASTATSLVSLHNFVLPKMSAPAIELSVEDNDALQKLVFL
RIVEAYKQVAVCGGSQLRFSLLSYLGVELSLELDLWTCLQTHILSDYVIHEGHEMTLRVL
YRLYGEAEEERDFFSSTTATSVYETFLLKVAETLKDSFPASDKSLSRLFSEVPYLPQSSL
KLLESLCSPEIGDKEEKELNSGDRVTQGLSAVWNLIMLRPTLRDVLLKIALQSAVHHMEE
VRMKAIRLVANKLYPLSSISLQIEEFAKEKLLSVVDSLDSATEGTENSNIQWKKNTESVL
AAKDQMSGEVMATDPSAHTSQSCSPGSIADTSVSDAQRCMSLYFALCTKKHSLLRQIFII
FRSSPESVRQAVHSHMPILIRTMGASPALLEIISDPPDGSEKLLMQVLHTLTDGRVPSAE
LISTIKTLYETKIKDMEILFPILSFLPKEEVLRVFPHVIHLPQEKFQAALARLLQGPTPS
GPVLTPSEILIAIHSIDPDKDGIPLKKVTDACNACFEQRQMFTQQVIAKVLNQLVEQIPL
PLLFMRTVLQAIGAFPALVDFIMDILSRLVSKQIWKYPKLWVGFLKCVQLTQPHSFIVLL
QLPQAQLEAALNKIPALKAPLATHVNEQDIKSTLPRSVLMVLGIASESQAPSQSQSGQPE
AGGDAVSSDKDVVTEKSKEASGGSGS
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atggtgggaatcatggcgactgattgtggagataagattagaagtctcattgcctcagtt
accttcgctgctgataacccttccaagtttcaaaaccttcatcaacttaagcaccaattg
ttgaagagtgttcaagattcttctatctctttatctgattttcttccttccttgttgaag
ctcctgtctgatgattttagccctgttcgtaaatgcatctctgaggtgattggtgaaatt
gggttgaagcatttggagtttttaccagaaactatacctgcattgttgactgttgtggat
gatgatactccagctgtggctcggcaagctattacatcatgtactaatatattctgctgc
actctggagaaaatagcaattcagggtctacatgaacgcaaattggatgatttgcttgag
tccacatgggagtggatgctgaaggtaaaggaaaagatctatacaattgcttttgagtct
ggaagtgatgggatacgattattggcactgaaatttgttgcatctatcattctcatttat
acaccagatcccaatggtggtactgagccgccaactcatccgattagtgatagtgatgat
aaggttgtaggtaaagaaatgggattcaatatatcatggctccgtaaagggcatcctttt
ctcaagcttggagaactatctgttgaagctactcaaagcttgggattattgcttggtcaa
cttcgcttacctatggtgaaatccctcagcacatcgatgatggttgtgctcattaattgt
ttgtcagccatcgcagtaaagagaccctctttttacggacgcattcttccagttctcctg
ggtctggatccttcaaattctgttgtaaaggaattgcatgcttatggagttcaaaatgct
ttgaagactgcatttctctcgtgtttgaagtgtgcacaccctagtgctaccccgtggcgg
gatcgcttacttgatgctctcagggaaatgggtgttggagatttggcagaacaggccctt
gaaagagtgtccaatatcaatggaaatgtgaagcaggaaacacctatatcaattgttaag
gaggagctggcgcttgaacaccatgatgcagctcatactaaggtgggaaggaaaagatct
agtgacatggatgtaggtaacagaaatgaagatgatgatacccctggaaaacgtgccaga
tctgtgcatattgtatctgaggaactgaccgataagtccaatattccttataaagctgtt
gaagttaaacctgatacaactggaaaagcaaatatttctaatgaagatgactcagctccc
gtgcgacatcttatagggctttttggggatttggttgctcaaggtgaaaaggctgctgca
tctttgcagattcttatatcaggtatctctgccgacttacttgcagacgtggtgatagct
aacttgagaaacttgccttctacttgccccatgattgagggagatgagcttcaagcaaat
ataggtttgcagcaaagtagtgtggatactgaaagtcccttcagacaaatttcatctttt
ttgacaaatgccttccactgtagcgattctgaacaaacctcagcaatggatgctaaacaa
ctagtgtcatatgacattgagcatccagttctacaagattcacatgctatggacattgct
gataataatgtggcatgtactgtttcaaacaaatcgacggagcttgtcgattcagatata
ccgtgtgctgttgtttctgataatcttttggaaatacccaaggtttcagctggtacctct
gagttgcaagacgtgggacccacagatactgccattccaggcttggataatgctcatagg
gttggactgcgtgattttgttgcttcttcgtcattagcctccacagatttggatgatggg
agccaagatcaagctaccagtgttgggagaagatctatagcagaatcacttccatccgtg
tcgactgagaagtctgaggaacttagctccagagctgctgcagttgatgcaaacattgga
atggcctccacagcaacttcactagtttcacttcacaattttgtcttgcctaagatgtca
gcacctgctatagaactttctgttgaagacaatgatgcgcttcaaaagctggtcttttta
cgaattgtggaagcatacaagcaggttgcggtttgtggaggttcacagcttcgattttct
ttactttcttatttgggagttgagctatcgttggagctggatctttggacatgtctacaa
acacacatattgtcggattacgtaattcacgagggacatgagatgaccttgcgtgtcctc
tatcggctgtatggggaggcagaagaagagcgcgactttttttcttcgacaactgctact
tctgtatatgaaacgtttcttcttaaagtggcagaaacactaaaagattcttttccggca
tcggacaaatccttaagtcgattgttcagtgaagttccatatcttccccaatcaagtctt
aaactattagaaagcttatgctctcctgagattggagataaagaagaaaaagaactgaac
agtggagaccgggtcactcaaggtcttagtgctgtgtggaacttgataatgctgagacca
actttgcgcgatgtactgttgaaaattgctttgcagagtgcagttcatcatatggaggaa
gtgcgtatgaaggcaatacgtctggttgcaaataagttatatcctttgtcgtcaatttcc
ctgcaaatagaagaatttgcaaaggagaagctgctatctgtggtcgattcacttgattct
gctactgagggcactgaaaattctaatattcaatggaaaaagaatactgaatcagtgttg
gctgctaaagatcaaatgtcgggggaagtaatggctacagacccctctgcgcatacttcc
caatcttgttcccctggaagtattgctgacacttctgtgtctgatgcacaacgatgcatg
tcactgtattttgccctgtgtactaagaaacattctcttcttcgtcaaatattcatcatt
tttagaagctcgccggagtctgtgagacaagctgttcatagccacatgcctattcttatt
cggactatgggtgcatcaccagcccttcttgagattatctctgatccccctgatggaagt
gagaaacttctgatgcaggttttgcatactctcacggatggcagagttccttcagcagaa
ttgatttctacaattaagacactttatgagaccaagataaaggatatggagattctgttt
ccaatattgtcttttctaccgaaagaagaggtgttgagggtctttcctcacgttattcat
ctcccacaagagaagttccaggctgctcttgcacgcttgctgcaggggccaactccttct
gggcctgtgttaacaccatcagaaatcttaattgctatccacagcatagatcctgataaa
gacggaatccctttgaagaaggttactgatgcatgtaatgcttgttttgagcaaagacaa
atgttcacacagcaagtgattgccaaagttctgaaccagctggttgaacaaattcctctt
ccattattgttcatgagaacagttctacaagcaattggtgctttcccagctttggtggac
ttcataatggacatactttctcggcttgtaagcaagcagatatggaaatacccgaagtta
tgggtaggattcctcaaatgtgtgcaattgacacagccacattcttttatagtgttgctt
cagctaccacaagctcagcttgaagctgctctgaataaaattccagcactgaaggcacca
ctagctacgcatgtaaacgaacaggacataaaatctacactcccgaggtctgttcttatg
gtacttggcatcgcgtctgaatctcaagctccaagtcagtcacaatcaggccaaccggag
gctggtggggatgcagttagctctgataaggatgttgtcacagagaagagtaaagaagca
tctggtgggagtgggagctaa
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integrated database retrieval system
