Amaranthus tricolor (tampala): 130804832
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Entry
130804832 CDS
T09367
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130804832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130804832
03036 Chromosome and associated proteins [BR:
atri03036
]
130804832
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130804832
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
130804832
mRNA degradation factors
5'-3' decay
Decapping complex
130804832
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130804832
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
130804832
NCBI-ProteinID:
XP_057525431
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All DBs
Position
17:11411834..11430731
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AA seq
511 aa
AA seq
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MNHNARPRYPPGIGNGRGRHYTQQNPNFQSRPPYNHQQHHNQPHYMQKNSPQQNQYHNQQ
QQQQQQWMMRRPANYYAAAATTTSVVDSTQSTFNEVDETVQAPQSADSSSQNWKASLKLP
PQDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILAR
AKNGTGKTAAFCIPALEKIDQDNNVIQAVILVPTRELALQTSQVCKELGKHLKIEVMVTT
GGTSLKDDIMRLYNPVHLLVGTPGRILDLAKKGICVLKDCSMLIMDEADKLLSPEFQPSV
EQMIRFLPENRQILMFSATFPVTVKDFKERYLQKPYVINLMDELTLKGITQYYAFVEERQ
KVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMIQDHRNRVFHDF
RNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRYGHLGLAVNLITY
EDCFNLHKIEQELGTEIKQIPPHIDKGIYCH
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgaaccataacgctcgacctcggtatccaccggggatcggtaatggtcgcggcagacat
tacacgcaacaaaaccctaattttcagagtcggccaccgtataatcatcagcaacaccat
aatcaacctcactacatgcagaagaattcgccgcagcagaatcagtatcataatcaacaa
cagcagcaacaacaacaatggatgatgagacgtcctgctaattattatgctgctgctgct
actactacctctgttgtcgattcaactcagtctacttttaatgaagttgacgagactgtt
caagcacctcaatctgctgattctagctctcaaaattggaaggctagtcttaagcttcca
cctcaagacacgcgttacaagacagaggatgtcactgctacaaagggaaatgagttcgag
gattatttcttgaaacgtgaattacttatgggaatatatgagaaggggtttgaacgtcct
tctcctattcaagaagaaagtatcccaattgctttgaccggaagtgatattcttgctaga
gctaaaaatggaactggcaaaacagctgcattttgcattccagcattggaaaaaattgat
caagacaacaatgtgattcaagcggttatacttgttcccactagagagttagccctacaa
acatcacaagtttgcaaggagcttggcaagcatctgaagattgaggtcatggttacaaca
ggagggacaagtttgaaggatgatattatgcgtttgtacaacccagtgcatttacttgtt
ggaacacctggtagaatactggatttggcaaagaagggtatatgtgttttgaaggactgc
tccatgcttataatggatgaggctgacaaacttctgtcccctgaattccaaccatcggtg
gagcagatgattcgctttctgcctgaaaataggcagattttgatgttttcagctactttt
cctgtaactgtcaaggatttcaaagaaagatatttgcaaaagccctacgtcattaacctt
atggatgagcttactctcaaaggtattacgcaatattatgcttttgttgaagaacgacag
aaggtccattgcctgaacacacttttctcaaagctgcaaataaatcaatccattattttt
tgcaactctgtgaatcgagtagagttgttggccaagaaaattacggagctcggttattct
tgcttttacattcatgctaaaatgatccaggaccatcgaaacagagtttttcatgatttc
cgcaatggtgcatgcagaaatcttgtttgcacagatctgtttaccagaggtatagacatt
caagccgtaaatgttgttatcaattttgatttcccaaagaattctgaaacctatttgcac
agagttggccgttctggaagatatggacaccttggattggctgttaatctaattacatat
gaagattgctttaacttgcacaaaatagaacaagagcttgggactgaaatcaagcaaatt
cctccgcacatagataagggtatctattgtcattga
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