Amaranthus tricolor (tampala): 130805098
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Entry
130805098 CDS
T09367
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130805098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130805098
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130805098
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130805098
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
130805098
NCBI-ProteinID:
XP_057525708
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Position
2:4457586..4467088
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AA seq
581 aa
AA seq
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MHGGFNVPNMSGTLTSRNSSMNNVGSGGVQQPTGNVPGGRFASNNIPVALSQMSHGSSHG
GYPGVTNRGGMNVVGNPGYSSNTNGVGGSIPGILPTSAAIGNRSAVPGLGVSPVLGNAGP
RVTGSMGSMVGSGNIGRSIGSGGGLSIPGLASRLNMSTNSGSGSLGVQGPNRLSSGVLQQ
ASPQVLSMFGNSYTSAGGSLSQNHAQAMNNLSSMGMLSDENANDSSPFTLNDFPQLGSRP
NSAGGPQGQIGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNAEYGMDFQQKEQI
HDNGVSMQSQHFSMGRSPGFNLGGMYSSHRPQQQQHTLSNSMPPGISLRSMNSPSGVSNI
SSYEQQFMQQYQPQQNQSQFRLQQMPSINQTFRDQGIKPIQSPQPTTDPYGLLGLLSVIR
MSDPDLTSLALGIDLTTLGLNLNSSENLHKTFASPWSDEPIKGEPEFTIPECYYAKQPPP
LSQAYFAKFQLPTLFYIFYSMPRDEAQIYAANELYNRGWFYHKDLRLWFMRVPNMEPLVK
TNAYERGSYLAFDPNTWDTSIKENCVIHYELIEKRPALHHQ
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgcatggtggctttaatgtccctaatatgtcgggtacccttacgtcccgaaattcatcc
atgaacaatgttggttctggtggggttcaacaaccaactgggaatgttccaggcgggagg
tttgcatcaaataatatccctgtcgcactgtctcagatgtctcatgggagttcacatggc
ggatatccaggagttacaaatagaggaggtatgaatgttgtaggaaatcctggatatagt
agtaacacaaatggcgttggtggttctattccgggaattctccctacttccgctgcaatt
ggtaatcgtagtgctgttccaggactaggagtctcccctgttttgggaaatgcaggtcct
cgagttacaggctcaatgggaagtatggttggcagtggaaacattggaaggtctataggt
tctggaggaggactctctataccaggtcttgcttctcgcttgaatatgtctacgaacagt
ggatctgggagcttaggtgtgcaaggacctaataggttgtcaagtggtgtacttcaacaa
gcttctcctcaggtccttagtatgtttggaaactcttatacctctgctgggggttcgctg
tcgcaaaatcatgcccaagcaatgaataatttaagctccatgggaatgttaagtgatgag
aatgcgaatgacagttccccgtttactttgaatgacttccctcaattgggtagtcgtccc
aactctgctggaggtccgcagggacaaataggttccctgagaaagcaaggtcttggtgtt
agtcctattgttcagcaaaatcaggaattcagcatccaaaatgaagattttcctgcttta
ccaggttttaaaggtggaaatgcggaatatgggatggattttcagcaaaaagaacagatt
cacgataatggtgtatcaatgcaatctcaacatttctctatgggaaggtcacccggattc
aatttggggggcatgtattcatcacaccgtcctcagcagcagcagcatacactttctaat
agcatgccccctggcatcagcttgaggtctatgaattctcccagcggggtttctaatatc
agttcttatgagcagcagtttatgcagcagtatcaaccgcaacagaaccagtcacaattt
cgcttacagcagatgccatctatcaatcagacttttagagatcagggcataaagcctata
caatctccgcaaccaactacagatccctatgggttactgggcttgttgagtgtcataaga
atgagtgatcctgatctgacatcacttgcactcggcattgatctaacaacattgggattg
aatttgaattcatcagaaaatcttcacaaaacttttgcttcgccctggtctgatgagcca
atcaagggtgaacctgagttcacaatacctgaatgttattatgcaaaacaacctccccct
ttaagtcaagcttattttgcaaagttccagctgccgactctgttttatatcttttacagc
atgccaagagatgaagcccaaatatatgcagctaacgaactttataatagaggatggttc
tatcacaaagacctccggctttggttcatgcgagttcccaacatggagcctctagttaag
accaatgcgtacgagagagggtcttatcttgcctttgatccaaatacgtgggatacatct
attaaggaaaattgtgttatccattatgaactcattgagaaaagaccggctctacatcac
caataa
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