Amaranthus tricolor (tampala): 130805129
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Entry
130805129 CDS
T09367
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130805129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
atri03009
]
130805129
Ribosome biogenesis [BR:
atri03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
130805129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
EIF3I
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_SPT8
Beta-prop_VPS8
Beta-prop_WDR75_2nd
PEP5_VPS11_N
WD40_RFWD3
WD40_like
Beta-prop_DCAF12
Beta-prop_LRRK2
Beta-prop_IP5PC_F
Beta-prop_NOL10_N
VPS8_N
Beta-prop_SCAP
Nbas_N
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
130805129
NCBI-ProteinID:
XP_057525768
LinkDB
All DBs
Position
2:6439702..6459683
Genome browser
AA seq
907 aa
AA seq
DB search
MGIFEAFRAIGYITSSIPFSVQKLGTETFVTVSVGKAWQIYNCAKLNLVLVGPQLPKKIR
ALASYRDYTFAAYGNKIAVFKRAHQVTTWSSHRAKIKLLYLFGDHILSVDVDGHMFIWAF
KGIEQNLEPISHIVLDDRFLPTCIVHPDTYLNKVILGGQKGNLQLWNVNTKKKLYDFKGW
NSPISCCVPSPALDVVAVGCADGKIHVHNMRYDEELVTFTHSMRGAVTALSFSTDGQPLL
ASGGTSGVISIWNLEKRRLQSVIREAHDSAIISLHFFANEPVLMSASADNSIKMWIFDTT
DGDPRLLRFRNGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVVQDQQSRELSQRHVARR
AKKLRIKEEEIKLKPVVAFDCAEIRERDWCNVVTCHMDTSEAYVWRLQNFVLGEHILKPS
EENRTAVKSCAISACGNFAVLGTSGGWVERFNLQSGLSRGSYLDKSERRSCAHDGEVVGV
ACDSTNTLMITAGYYGDIKVWDFRGRELKSRWEVGCHVIKIVYHRPNGLLATIADDLVIR
IFDVVALRMVRKFEGHKDRVTDMCFSEDGKWLLSSSMDGTLRIWDVILARQIDAVQVDVA
ITALSLSPNMDVLATTHVDQNGVYLWVNQAMFSGSSSIEPYASGKNVQHVSLPSVSTAQG
SKDTDLEEGDTEHLYLEKTAKMPIFDQKMPDLITLSLLPKTQWQSLVNLDVIKVRNKPIE
PPKKPEKAPFFLSSIPSLSGDIMFKPSEVVNEEPKDGDSRHNFDHMTGLPPSPFVQVLQS
AAESKNFSAFTDYIKGLSPSSLDMELRMLQIIDEDEFQELSKGPALLSLGLLLDYFLHEI
SFRNNFEFVQAVLRLFLKIHGETVRCQSQLQEKAQKLLETHCAVWQSVDRLFQNSRCMIA
FLSNSQF
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgggcatttttgaagcctttagagcaattggctacattacaagttcaatacctttctct
gttcaaaaacttggcactgaaactttcgtcactgttagtgttggaaaagcttggcaaatc
tacaattgtgctaagcttaacttggtacttgttggtcctcaactccccaagaaaattcgg
gctttagcttcttatcgtgattatacctttgcagcatatgggaacaaaattgcagtattc
aaacgtgctcatcaggttacaacttggagttcacatagagcaaagatcaagctattgtat
ttatttggtgaccacattttgagtgtcgacgttgatggacatatgtttatatgggcattt
aaaggaattgagcaaaatttagagcccattagccatattgtgttggatgacagattttta
cccacttgtattgtgcatccagatacttacttgaacaaggttattttggggggccagaaa
ggcaatttgcagctttggaatgttaacacaaagaaaaagctttatgatttcaagggttgg
aattctcccatttcttgctgtgtcccgtctccagcactagatgttgttgctgtaggttgt
gccgatgggaaaatccatgtccataatatgcgttatgatgaagagcttgtcacatttaca
cattcaatgcgtggtgctgtgactgctttatcttttagcacagatgggcaacctctgtta
gcatctggaggtacttctggtgtcattagtatatggaatcttgagaaaagaaggctgcaa
tcagttataagagaggctcatgacagtgcaattatttcacttcacttctttgcaaacgag
cctgttcttatgagtgcatcagcagacaactctattaaaatgtggatattcgacactact
gatggggacccacggcttttacggttccggaatggtcatagtgcacctcctctttgtata
aggttttatgcaaacggtaggcacattctctctgctggccaagatcgagctttcaggctt
ttttccgttgttcaggatcaacaaagtagggagctctcgcagcgtcatgttgctagaaga
gccaagaagctaaggataaaggaggaagaaatcaaactgaagcctgttgtagcatttgat
tgtgctgaaattagggagcgtgattggtgcaatgtggttacttgtcacatggacacgtct
gaagcatatgtttggagactgcaaaactttgtattgggagagcacatactaaagccctct
gaagaaaatcggactgcagtaaagtcttgcgctattagtgcatgtggaaactttgctgtt
cttgggacatctggtggttgggttgagcggtttaatctccaatctgggctaagccgaggg
tcttacttggataagtctgaaagaaggagctgtgctcatgatggagaagtggttggagta
gcttgtgattcaacaaatacccttatgataactgcaggatattatggtgatataaaggta
tgggatttccggggtcgtgagttgaaatccagatgggaagtaggctgtcatgtaattaag
atagtttaccataggcctaatgggttattggctactattgctgatgatttggtcattcgt
atatttgatgttgtggcacttagaatggttcgaaaatttgaaggacataaagaccgtgtt
accgatatgtgctttagtgaggatggaaaatggcttctttcgtccagcatggatggaaca
cttcgaatttgggatgttattttagctagacaaatagatgcggttcaagttgatgtggcc
atcacagcactctctctgtctcctaatatggacgtccttgcaactactcatgttgatcaa
aatggtgtctacttatgggttaatcaggcgatgttctctggatcatctagtattgaaccg
tatgctagcgggaagaacgttcagcatgtcagtttgccatctgttagtacagctcagggt
agtaaagacactgatcttgaggaaggagatactgagcatttatatttagaaaagactgcc
aaaatgcccatattcgaccagaaaatgcctgatttaattacactctcacttttgcccaag
acccagtggcaaagcttggtcaatctggacgttattaaggttcgcaataaacccattgag
cctcctaagaaacctgaaaaggcgccattctttttatcttcaattccgtctctttcaggg
gacattatgtttaaaccaagtgaggtggttaatgaggagccaaaggatggagattctaga
cataattttgatcacatgactggtttgcctccttcaccatttgtgcaagtgctccagtct
gctgcagaatccaaaaacttttcagcattcaccgattacattaaaggtttatctccttca
tctttggatatggagcttcgaatgcttcaaattattgatgaagatgaatttcaagaactc
agtaaaggaccagcattgctttcacttggtctgcttttagattatttccttcatgaaata
tctttcagaaacaattttgagttcgtgcaggcggttttgagactgtttctaaagattcac
ggagaaacagtgcgatgtcaatcacagcttcaggagaaggcacagaagttattagaaacg
cactgtgcagtgtggcaaagtgtagatagattatttcagaattctagatgtatgattgct
tttcttagcaattctcaattttga
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