Amaranthus tricolor (tampala): 130805292
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Entry
130805292 CDS
T09367
Name
(RefSeq) transcription initiation factor TFIID subunit 6 isoform X1
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130805292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130805292
03036 Chromosome and associated proteins [BR:
atri03036
]
130805292
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130805292
Coactivators
SAGA/TFTC/STAGA complex
130805292
Chromosome and associated proteins [BR:
atri03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
130805292
STAGA complex
130805292
TFTC complex
130805292
SAGA complex
130805292
SLIK complex
130805292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
CBFD_NFYB_HMF
TFIID-31kDa
Motif
Other DBs
NCBI-GeneID:
130805292
NCBI-ProteinID:
XP_057525969
LinkDB
All DBs
Position
2:11120875..11134283
Genome browser
AA seq
539 aa
AA seq
DB search
MSIVPKETIEVIAQSVGINNLSVDATLTLAPDVEYRMRELMQEAIKCMRHSRRTVLTTDD
VETALSIRNVEPVYGFASGDPLRFKRAVGHMDLFYAEDKDVDFKDIIEAPLPKAPLDTSI
MCHWLAIEGVQPAIPENAPVEVLSVPNGKRSESKGDGLPIDIKVPVKHVLSRELQLYFDK
ITELAIRGSETVLFKEALVSLATDAGLHQLVPYFTCFIASEVPRGLGDFCLLFALMRLVQ
SLLKNPHIQIEPYLHQLMPSVVSCLVTRRVGNRLADDHWQLRDFTANLVASICKRFGHAY
SNLQPRITRTLVNAFLDPKRAITQHYGAIQGLAALGPSVVRHFIFPNLVPYMELLEPEMR
LESQNNEMKRHEAWRVYGALLHAAGKCIYITLKCFPTMPSPESHEIWGRNKRVMTLALGK
RKVSVEHREEQPPLKRVATDGPLLDNSTPSVRENEVEIPAANSSDPDLAATSERMTASQK
QESKNDIDQIDKQYRKSEAILNQVWKDDLNSGKVLVLMLELFGESMFPFIPTPELSLFL
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgagcattgtgccgaaggaaacgattgaggtcatagcccaaagtgtagggatcaataac
ctctctgtagatgctacacttactcttgctcctgatgtggaataccgaatgcgtgaactt
atgcaggaagctatcaaatgtatgcgtcattcaaggagaactgttttgacaacagatgat
gtggaaactgcattaagcattagaaatgttgagccagtttatggctttgcgtctggagat
cctttaaggtttaaaagagctgtaggacacatggatttattttacgctgaggataaggat
gtggacttcaaagatataattgaagctcctttaccaaaagcaccacttgatacatcaata
atgtgccattggctagcaatagaaggggtgcaacctgcaattccagaaaatgctcctgtt
gaagtactttctgttcccaatggaaaaaggtccgaaagtaagggtgatggtctacccatt
gacatcaaagtaccagtcaaacatgtactatctagagagcttcagctatactttgacaag
atcacagagcttgctatcagaggttctgaaactgttcttttcaaagaggcattggtcagt
ttagcaaccgatgcagggcttcatcaattagttccatatttcacatgtttcatagctagt
gaggttcctcgtggtctaggggatttttgtctgttatttgctttgatgcgccttgtgcaa
agtctgctgaaaaatccccacatacaaattgagccttatctgcaccagctgatgccttct
gttgtgagctgtttagtcacaagaagagtgggcaacagattggctgacgaccattggcag
ctgagggatttcacagcaaatctagttgcttcaatttgcaaaagattcgggcacgcatac
agcaatctccagccacgtataacaagaactctagtaaatgcgtttctggatcccaaacga
gccatcactcaacactatggtgcaattcaaggattggctgcccttggacccagtgtggtg
cgccattttatttttccaaatcttgtgccatatatggagcttcttgaacctgaaatgcgt
cttgagagtcaaaacaatgaaatgaagaggcatgaggcctggagagtttatggagcattg
ttgcatgcagctgggaaatgcatttatattacacttaagtgcttccctaccatgccatca
ccagagtctcatgaaatttggggtagaaataaaagagtgatgacattggcactaggtaaa
cgtaaggtaagtgtggaacacagagaggagcaaccacctctcaaaagagtagccactgat
ggccctttgttggacaattctacaccttctgtcagagaaaatgaggtagaaatacccgca
gctaatagcagtgaccctgatttagccgcaacttccgagaggatgacagcatcccagaaa
caagagagcaaaaatgacatagatcagattgacaaacagtatcgaaagtcggaagctatc
ctgaatcaggtttggaaggacgacttgaactctgggaaagttcttgtattgatgcttgag
ctattcggtgagagtatgttccccttcattcctactcctgagttatcattatttttatga
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