Amaranthus tricolor (tampala): 130805942
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Entry
130805942 CDS
T09367
Name
(RefSeq) serine/arginine-rich splicing factor RS41-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130805942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atri03041
]
130805942
Spliceosome [BR:
atri03041
]
Common components
Common spliceosomal components
SR proteins
130805942
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RNA_bind
Nup35_RRM_2
RRM_5
RRM_Nup35
RRM_fung
Motif
Other DBs
NCBI-GeneID:
130805942
NCBI-ProteinID:
XP_057526779
LinkDB
All DBs
Position
2:2135439..2141980
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AA seq
403 aa
AA seq
DB search
MRPIFCGNFDFEARSSDLERLFRRYGKVDRVDMKSGFAFVYMDDERDAEYAIRALDRSEY
GRKGRRLRVEWTKHERGGRKPVSSRRPPNTRPSKTLFVINFPYDTKTRDLERHFEPYGKI
LNVRIRRNFAFVQYESQEDATKALDATNLSKLFDRVISVEYASRDDDDNRRGGYSPERRG
RDRSPDRRRRSPSPYRRERGSPDYGTGSSPAPYRRERGSPDYGNGTSHSPRRIQRSPDYG
NVPNHSPHRVQRSPDYGNGSSRSPRRVQGSPEYGNGPSRSPRRVEKSPEYGVRSSRSPRR
VHRSSEYVRDRSRSASPRPEQRRSPGFRDRSRSPRGGDRNGNGYGRRPSLSPYPEEGAIS
DDAREPRSPINKTSLRDSPIGEYGSPVNRYRSPSPPGRERSQS
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaggccaatcttttgtggaaactttgactttgaggcacgttcatctgacttagagcgc
ctcttccgacgatatggcaaagttgatagagtggatatgaaatctggattcgcatttgtg
tatatggatgatgaaagagatgctgaatatgccattcgagctcttgatagatctgaatat
ggtagaaagggaaggagactccgcgttgagtggacaaagcacgaaagaggtggcagaaaa
ccagtcagttctagaaggcctcccaatacaaggccatcaaagaccttatttgtcatcaat
tttccctatgataccaagacaagggacttggaaagacactttgaaccatatgggaagatt
cttaatgtaaggatcagaagaaattttgcatttgtgcagtacgagtcacaggaagatgct
actaaagctctggatgccacaaacttgagcaagttatttgatcgggtcatctctgttgag
tatgcttctcgtgatgatgatgacaacagaagaggtgggtacagcccagagagaagaggc
cgtgataggtcacctgataggaggaggaggtcaccaagtccttacagaagagagagagga
agtcctgattatggaactggttctagccctgctccctacaggagagagagagggagtcct
gattatgggaatggtacaagccatagtcctcgtcgaatacagaggagtcctgattatggg
aatgtcccaaatcatagtcctcatcgagtacagaggagtcctgattatgggaatggctca
agccgaagtcctcgccgagtacaagggagtcctgaatatgggaatggcccaagccgaagt
cctcgtcgagtagaaaagagtcctgaatatggggttcgttccagccgtagtccacgtcga
gtacacaggagctcagaatatgtccgtgatcggagtaggagtgcaagccctcgtcctgag
cagaggcgctctcctggtttccgtgatcgtagtagaagtcctcgtgggggtgacagaaac
gggaatggttatggtcgtcgcccgagtttaagcccgtatccagaggaaggagccatctct
gatgatgctagagaacccaggagcccaattaacaagactagcttgagagatagccctatt
ggtgaatatggaagcccagtcaacagatatagaagtccctcacctccagggcgggaaaga
tcacaatcttga
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