Amaranthus tricolor (tampala): 130805976
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Entry
130805976 CDS
T09367
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130805976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130805976
03110 Chaperones and folding catalysts [BR:
atri03110
]
130805976
03029 Mitochondrial biogenesis [BR:
atri03029
]
130805976
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
atri04147
]
130805976
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
130805976
Messenger RNA biogenesis [BR:
atri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
130805976
Chaperones and folding catalysts [BR:
atri03110
]
Heat shock proteins
HSP60 / Chaperonin
130805976
Mitochondrial biogenesis [BR:
atri03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
130805976
Exosome [BR:
atri04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
130805976
Exosomal proteins of other body fluids (saliva and urine)
130805976
Exosomal proteins of breast cancer cells
130805976
Exosomal proteins of colorectal cancer cells
130805976
Exosomal proteins of bladder cancer cells
130805976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Ribosomal_L29
Mito_fiss_Elm1
Motif
Other DBs
NCBI-GeneID:
130805976
NCBI-ProteinID:
XP_057526827
LinkDB
All DBs
Position
2:39413187..39418132
Genome browser
AA seq
586 aa
AA seq
DB search
MASANAISTTSILSSSRKGCLTKAIPQQARKVSYKTSSRRCVVRASAKEIAFDQNSRAAL
QAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADAMENAGAALIREV
ASKTNDSAGDGTTTASVLAREIIKQGLLSVTSGANPVSLKKGIDKTIQGLVEELEKKARP
VNGREDIKAIASISAGNDDLIGTMIADAVDKVGPDGVLSIESSSSFETTVEVEEGMEIDR
GYISPQFVTNPEKAIVEFENARVLVTDQKITAIKDIIPLLEKTTQMRAPLLIIAEDVTGE
ALATLVVNKLRGIINVAAIKAPGFGERRKAMLQDIAILTGAEFQASDLGLLVENTSVEQL
GIARKVTVTKDSTTLIADAASKDELQARIAQLKKELFETDSVYDSEKLAERIAKLSGGVA
VIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTSVPAIKEKLEDAD
ERLGADIVQKALIAPASLIAYNAGVEGEVVVEKVMSSDWEIGYNAMTDTYENLVESGVID
PAKVTRCALQNASSVAGMVLTTQAIVVEKPKAKAAAAAAAQSGLTV
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgctaatgctatttcaaccacttctattctttcctcgtctagaaaggggtgt
ttgacgaaagcaattcctcagcaagcacggaaggtgagctataaaacttcgagcaggcgg
tgtgttgttagagcctccgcgaaggaaatcgcctttgaccagaattcaagggctgccctt
caagctggcattgacaaacttgctgatgccgttggacttacccttggtccaagagggaga
aatgtcgtcttagatgagtttggaagccctaaggtagttaatgatggagttaccattgct
cgggctattgaattggctgatgcaatggagaatgctggtgctgctttaattagggaggtt
gcgagcaaaactaatgactctgctggtgatggaacaacaactgcttcagttcttgcacgt
gagattattaaacagggtcttctgagtgttacttctggtgccaaccccgtgtctttgaaa
aaaggaattgataaaactattcaagggttagtggaggaacttgaaaagaaagcaaggcct
gtcaatggtcgtgaggatatcaaagctattgcttccatttctgctggtaacgatgatttg
attggaactatgattgctgatgctgttgacaaagtcggcccagatggtgttttgtcgatt
gagtcatcatcatcatttgagactactgttgaagttgaagaaggaatggagattgataga
gggtacatttctcctcaatttgttacaaatcccgaaaaagcaattgttgaatttgagaat
gccagagttttggttactgaccagaagatcaccgcaataaaggacattatcccattgttg
gaaaagactactcaaatgagagctcctttgctaatcattgccgaggatgttaccggtgag
gcattggctacacttgttgtaaacaagctacgaggtattatcaatgttgccgctatcaaa
gcaccgggttttggtgagaggagaaaggccatgcttcaagatattgctatcctgacaggt
gcggagtttcaggccagtgatttaggattgttggtcgagaacacatccgttgagcagctc
ggtatagcaaggaaggttacagtcactaaggattcaaccaccctcattgctgacgctgca
tctaaagatgagcttcaagctaggattgcgcaacttaagaaagaattattcgagactgat
tcagtctatgattctgaaaaactcgctgagaggattgcgaaattgtctggaggtgttgcg
gttattaaggttggtgcagccacagagactgagcttgaggatcgtaaattgcgaattgag
gatgcaaaaaatgctacttttgctgccatagaggagggtattgtgcccggtggtggtgct
gctctcgtccatctctcaacttctgttcctgctatcaaggaaaagctggaggatgctgat
gaacgtttgggcgctgacattgtacagaaggcactaatagcaccagcatctctgattgca
tacaatgctggagttgaaggagaggtggtcgtagagaaggtgatgtcaagcgactgggaa
atcggttataatgcaatgaccgacacgtacgagaacttggtagagtctggtgtgatcgac
cctgctaaggtgacaagatgtgccctgcagaatgcttcttctgttgccggaatggtattg
actacacaagcgatcgttgtggagaaacccaaggctaaagccgctgctgcagccgctgct
caatcaggtttaactgtataa
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