Amaranthus tricolor (tampala): 130806047
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Entry
130806047 CDS
T09367
Name
(RefSeq) ATP-dependent RNA helicase DEAH13
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
atri
Amaranthus tricolor (tampala)
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
atri03009
]
130806047
Enzymes [BR:
atri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130806047
Ribosome biogenesis [BR:
atri03009
]
Eukaryotic type
90S particles
Helicases
130806047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHX37_C
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
T2SSE
Motif
Other DBs
NCBI-GeneID:
130806047
NCBI-ProteinID:
XP_057526932
LinkDB
All DBs
Position
2:40037584..40049049
Genome browser
AA seq
1305 aa
AA seq
DB search
MDSSGDSNALILPPKLKTHKQKSNSQIICCQNKSLSKSQKRKLKKLEEEKEKQLLLSKSL
EALEKYTISDDAHSLLWSSQNIGQAETTREKRRRVMQFSKAGLDFLSSNMESKKKKGGSC
ETELDVCKSSQLEVSHEMDTFKPLPIEREHINSVPLLGPDDQNSLGDLEEIGPDGSIKEA
TASEDSCKINNLDAGSPSVPWCPDGDDKVIAATCEGKDESRLSTYVTRRVDGSVSEPPVA
PTVVHVVRPEDVENGRRDLPIIMMEQEIMETINNHSSVIISGETGCGKTTQIPQFLYEAG
YGSADCPMRRGVIGVTQPRRVAVLSTAKRVAYELGLRLGKEVGFQVRYDRKIGENCSIKF
MTDGILLREIQSDFLLKRYSVIILDEAHERSLNTDILIGMLSRVVRVRQATYEDQQKLLR
AGKEIIVEERVYPLKLILMSATLRVEDFTSGSRIFHEPPPVINIPARQFVVTTHFSKKTV
LKDYVGEAFKKVLKIHKKLPCGGILVFVTGQREVEDLCRLLRQASKQFGNRSSEVNKEID
KSTRNSSGQIDGYSMKEIDEALDPRASSDETDRFSCYDESHDESGNNDAYSSSISGSESE
SDVDSDFEDQKILKVDDSSVDLTEDVNLDALKVAFEALTEKTAPTLGSKGNEVNSGTENV
CSIKPFSSSMLKGEKKDPVGPLHVLPLYAMLPAAAQLRVFEEIKEGERLVVVATNVAETS
LTIPGIKYVIDTGREKVKEYNPSNGMESFKIQWISKASAAQRAGRAGRTGPGHCYCLYSS
AALCNQFPEFSIAEILKIPIDGVVLVMKSMGISKVANFPFPTSPDVTELMKAEKRLMALE
ALDSEGRLTLLGKTMALYPMSPRHSRLLLLAIQMTKTAISVRPNLVLGYAVAVAAALSSS
SPFLFQFDESQNNAHGIEQQEDSGSLGSKENKDKQAKLTKKQMKESSRLSRAKYFNLKSD
ALTAAYALQCFEQAANPSQFCKENTLHLKTMVEMSQLRKQLLQLVFNQRYSGLNQEFSWT
RGTIKDVENSWKVSSDKNPLSEKEEDILCQAICAGWADRVAKRIKGARSLSEEDAKINAI
RYQASLVEETVFLRRRSSISRAAPEFLVYHELLQTKRPYIHGATSVKSEWLVKYAGSLCT
YSAPMTDPKPSYDPHHDQVFFHVIPYFGPELWELPVSKSPIKDVQQRVTVFAYALLDGQI
LPCLKSVKNFMASPPSIILKPEALGQKRVGNLLRKLRTRSQTIDSCAKLNEAWKENPKLL
HSEILDWFQSGFHHVFDELWEKMHQEALLAPQDRFPDRSRRRKNS
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atggattcttcaggtgatagtaatgcacttatattgccacctaaattaaagactcataag
caaaaatccaattctcagataatttgttgtcagaataaaagtttgagtaaatcccagaaa
agaaagttgaagaaattggaggaagagaaggaaaaacaattattgctatcaaaaagcttg
gaagccttagagaagtatacaataagtgatgatgcacattcgcttctgtggtcttcccag
aacatcggtcaggcggagacaacacgggagaagcgtaggagggttatgcaattttctaag
gctggtttggattttctatcgagtaatatggagtccaagaaaaagaaaggtggttcatgc
gaaactgaattggatgtttgtaaaagctcccaattggaagtttcccatgagatggatact
ttcaaaccactacctattgagagagagcatataaactctgtgcctttgctagggccagat
gatcaaaatagtcttggtgatcttgaggagattgggcctgatggatcgattaaggaagca
acagctagtgaagatagctgcaaaatcaacaatttagatgctggaagtccctcagttcct
tggtgtcctgacggtgatgacaaagttattgctgcaacgtgtgaaggcaaggatgagtcg
aggcttagcacatatgtgacaagaagggtagatggatccgtttcagaacctccagttgct
cctactgttgtacacgtagtacggccagaagatgtggaaaatgggaggagagacctccca
attattatgatggagcaggagattatggaaacaataaacaatcatagcagcgtgattatt
tctggagaaactgggtgtggcaagaccacacaaattccacagtttctgtatgaagctggt
tatggttcagcagattgccccatgagacgtggtgttataggtgtaacccagcctcggcgt
gttgctgtgctctctacagcaaaacgtgtagcatatgagcttggattgcgacttggtaaa
gaagttggttttcaagttaggtatgacagaaagattggagaaaactgctccataaaattt
atgacagacgggattctacttcgagagattcagagtgatttcttgttgaagcgctactct
gtaattatactggatgaggctcatgaaaggagtctaaacacagacattctaattggcatg
ctttctcgtgttgttagggtgcgccaggcaacatatgaagatcagcagaagctgttgcgg
gctggaaaagaaatcatcgtcgaagaaagagtatatcccctaaaacttatattaatgagt
gcaaccttgcgggttgaggatttcacttcaggaagtcggatatttcatgaacctccacct
gttataaatattccggcaagacagtttgtcgtgacaactcacttctcaaagaaaacagtg
cttaaagactatgttggtgaggcatttaagaaggtcttaaaaattcacaagaagttgccc
tgtggtggcatattggtgtttgtcactggtcaaagggaagtagaggatttgtgtcgtttg
cttcgtcaagcttcaaagcaatttggaaacagaagcagtgaagtcaataaggagattgac
aaaagtactagaaatagtagtggccaaattgatgggtatagtatgaaagagattgatgaa
gcccttgatcctcgtgcaagctcagatgaaacagacaggttcagttgttatgatgaatct
catgatgaatcaggtaacaatgatgcatattcttcctccatttccgggtcagagagtgag
tcagatgttgacagtgattttgaagatcagaagattcttaaagtggatgatagttctgta
gacttaacagaagatgtaaaccttgatgctttgaaggttgcttttgaagctttgacagaa
aagacagctccaacattaggttccaaggggaatgaagtgaattctgggactgaaaatgtt
tgttcaattaagcctttcagctcgagtatgcttaaaggagagaaaaaggatcctgttggt
ccattgcatgttttgcctctttatgctatgcttccggcagctgctcagcttcgagtcttt
gaagagatcaaggaaggggagcgtctcgtagttgttgccactaatgttgctgagacctct
ttgaccattcctggaataaaatatgtgattgacactggaagggaaaaggtgaaggagtat
aatccttctaatggaatggaatcgtttaaaattcagtggataagcaaggcatcagctgct
caacgtgctggaagagccggaagaactggacctggtcattgttattgcttatattcttct
gcagctttatgcaatcaatttccagaattctcaattgctgaaattcttaaaattcccatt
gatggtgttgtcctcgtcatgaaatccatgggtataagtaaggttgcaaattttccattc
cctacctctccggatgtcactgagctcatgaaagctgagaagcgcttaatggctcttgaa
gctcttgatagtgagggtaggctgacacttttgggaaagacaatggctctgtaccctatg
agcccaaggcactctaggttgcttcttcttgctatacagatgacgaagactgcaattagt
gtacggcccaatttggttctaggttatgcagtggcagttgcggctgccttgagctcgtcg
agtccttttctttttcagtttgatgagagtcagaacaatgcccacggcatagagcagcaa
gaggattctggttcacttggcagcaaggaaaacaaagacaagcaagccaagctaacaaag
aaacaaatgaaagaatcttcgaggctttcacgagcaaaatatttcaaccttaagagcgat
gctttaactgcagcttacgccttgcagtgttttgagcaagctgcaaatccatcccaattc
tgtaaggaaaacacactacacttaaaaactatggtagaaatgtctcagctaagaaagcaa
ctactgcagttagtctttaatcagagatacagtgggctaaaccaagagttctcatggact
cggggaaccataaaagatgtggaaaatagttggaaagtgtcttccgataagaatcctctc
tcggagaaagaagaagacatcttatgtcaagctatatgtgctggatgggcagacagggtt
gcaaagcggatcaaaggagcccgttcattgtcagaagaagatgcaaaaatcaacgccatt
cgctatcaggcttctttggttgaagaaacagtgttccttcgccgcaggtcatccatctca
agagcagctcccgaatttttggtgtatcatgagttgcttcagacaaaacggccgtacatt
catggagcaacgagcgtgaaatcagagtggctggtgaaatatgcaggatcattgtgcacg
tattcagctcctatgacagatccgaaaccttcttatgatcctcatcatgatcaagtattt
ttccatgttattccatattttggtcccgagttatgggaacttcccgttagcaaatcacca
atcaaagatgtgcaacagcgtgttactgtctttgcttatgctttgctggacggtcagatt
ttgccgtgcttaaaatctgtcaagaacttcatggcgagcccacccagcatcatcttaaag
ccagaagcattgggtcaaaaacgcgtgggcaatcttttacgtaaattaaggacaagatca
caaacaatcgatagctgcgccaaactaaacgaagcatggaaagaaaacccaaaactgttg
cattcggaaatactggactggtttcagagcggatttcatcatgttttcgatgaattatgg
gaaaaaatgcatcaagaagcgcttttggcacctcaggatcgttttcccgacagaagtaga
agaagaaaaaacagttaa
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