Amaranthus tricolor (tampala): 130806101
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Entry
130806101 CDS
T09367
Name
(RefSeq) uncharacterized protein LOC130806101 isoform X1
KO
K06100
symplekin
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130806101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atri03021
]
130806101
03019 Messenger RNA biogenesis [BR:
atri03019
]
130806101
Transcription machinery [BR:
atri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130806101
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
130806101
U7-dependent histone pre-mRNA processing factors
130806101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
130806101
NCBI-ProteinID:
XP_057527013
LinkDB
All DBs
Position
2:complement(40516347..40540393)
Genome browser
AA seq
1239 aa
AA seq
DB search
MDEIGLKVLEHSNMLKPVSLALLKDEDPSVACQAIVSGMKFFDSILQDLVQQFIRNGKVE
RWAEEMWMRMIEFKDAILSLIFEPVSVRTRLLALKFLETYVLVFTPDAADTDRLNSGGKE
RRFNVSWLPSGHPVLDPDKLISEANSLFSYLLDMLKSSNRTPGPLTVTVVNCLASIARKR
PSLFGQVLHALLDFQSNSETRGGHAASLQYSVRSALLGFLRCTHPVIIESRDKFIRRLHL
MNAGEAADQALRQVDKMLRNSERSSRDPRAVKEEQSSTQIPHSGDLMKRKALHLHNDVRD
NGVEMASKRMRYSSNGKSSDQVQAHGSVDDNSADGISSEASLANNNVNPVEQMIAVIAAL
LAEGERAADSLELLISQIHPDLLADIVITNMIHLPRTAPLATQGVLPSNAQSFPSASAAQ
VADSTSLPVHSQMSAQQSSNTSTVTDSTSLPDLSGTSNLQVDSRRDPRRDPRRLDPRRIA
VPAEAPSLPVTEETTYVSSVSEGPGSVTKSTSITAEANTEPISPHFAPETEVDAKGMRTP
LVLKKEDMAKEEGENGSREIPSSDNNVHVDKSSRSSDLAVNENSIALASMVTQTDVTGLS
FVHESDDDSPPVSNERVPEETFADLPEIPSYIDLSEKQQQTLRKLAVEQIIKSYKDCKNK
EFCGTRMSLIARLVSWMQADDLVSMMVQQDIVLDYKDQQGHELVMHVLYFLHGLITTESS
ELSLGATDLYEKFLTGVAKTLLDTLPASDKSFSRLLGEAPMLTDSVMGLLENLCYSNLSN
VRGTDSRDDRITQGLGAVWSLILGRPLNRQACLTIALKCAVHSEDDTRVKAIRLVSNKLY
QLNYISETIEQYAKNKLLSAVEYTSDAETSSSAGSIKEVGVGEETSVSGTLHSDSGKLHV
VSQPGPSVSFSEAQRYISLYFALCTKKPDLLQLVFDAYARAGKSVKQAIHRHVPILLRSL
ESSYPQLLRIISDPPMGSENLLMLVLQTLAEQTIPSPDLISTVKHLYETKLKDVSILIPM
LSSLSKNEVLPIFPRLVDLPLDKFRLALAHILQGSAHTGPALTPAEVLVAIHDIVPEKEG
IALKKVTEACSACFEQRTVFTHHVLAKALNQMVDRTPLPLLFMRTVIQAIGSFPTLVDFI
MEILSKLVDRQIWRMPKLWVGFLKCMSQTQPHSFHVLLKLPSPQLESALNKYPNLRGPLV
AYSSQPNIISSLPSSTLAILGLSSELHMTNSHPVTSLHT
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggatgagattggtttgaaagtgttggagcattccaacatgctgaaaccagtgtcgctg
gccttgttaaaagatgaagatcccagtgttgcttgtcaagctattgttagtggcatgaag
ttttttgattctatacttcaagacttggttcaacagtttattcgaaatggcaaagttgag
agatgggctgaagagatgtggatgcggatgattgagttcaaggatgcaatactttctctc
atttttgagccggtttctgtgcggacaaggttattggcactgaagtttttggaaacatat
gtattggtttttaccccagatgcagctgatactgatagactgaactctggaggtaaggag
cgcagatttaatgtgtcatggttgccaagtggccatccagtgctagatccggataaactc
atatcagaggcaaacagcctgttttcctatttattagacatgttaaaatcatctaataga
actcccggtccattgacagtcactgttgtgaattgtctggcatctattgcaagaaagagg
ccttcactctttggccaagttttacatgcacttcttgacttccaatcaaactctgaaaca
agaggaggtcatgctgctagtttacaatattctgttaggagcgcgttgttggggttcttg
agatgtacacatcctgtcatcattgagtccagggacaaatttattagacgtctgcactta
atgaatgccggtgaagccgctgatcaagctcttcgacaagttgacaaaatgctgaggaat
agtgagcgttcatcacgtgatcctcgggctgttaaggaagaacaatcatcaacccagatt
ccacattctggggatttaatgaaaaggaaggcgttgcatctgcacaatgatgtgcgtgat
aatggtgtggagatggcttcaaaacgtatgcgttactcttctaatggaaaatcttcagat
caagttcaggctcatgggtctgttgatgataattctgctgatgggatctcttctgaagct
tccctggcaaataataatgtgaatcctgttgaacaaatgattgctgttattgctgcattg
ctagctgaaggggaaagggctgctgactcacttgaacttctaatttctcaaattcatcct
gatttgctggctgatattgtcataacaaatatgatacatttgccaaggactgcacctttg
gcaacgcaaggggtcttgccgtcaaatgcacaaagttttccttctgcgagtgctgcgcaa
gttgctgatagtacttctctgcctgttcattcacaaatgtctgcacagcaaagctccaat
acttcaacagttaccgacagcacatctcttcctgatttgtctggcacttctaatctccaa
gtggattcaagacgtgatccaagaagggatccccgccgcttggatcccagaagaattgca
gtacctgctgaagcaccatcacttcctgttacagaagaaactacctatgtgtcatctgta
tccgaaggtcctgggtctgtaactaaatccacttcaattactgctgaagcaaataccgaa
cccatctcaccacattttgcaccagagactgaagttgatgcaaaaggtatgagaactcct
ctggttctcaagaaagaggacatggctaaagaggagggagagaatggatccagagagata
cctagttcagataataatgttcatgttgataagtcatctcgctcatctgaccttgctgtc
aatgagaactccatcgctctggcatcgatggtcactcagacagatgtaacagggctttct
tttgtccatgaatctgatgatgattctccgcctgtttcaaatgaacgtgtgcctgaagaa
acttttgcagacttgcccgaaattccgtcttacattgatttgtcagaaaaacagcaacaa
acgttgaggaaactggccgttgaacagatcattaaatcgtataaagattgtaaaaacaaa
gaattctgcggcaccaggatgtctctaattgctcggttggtctcttggatgcaagctgat
gaccttgtatcgatgatggtgcaacaagatattgttttggattacaaagaccagcaggga
catgagcttgtaatgcatgttttatactttctccatggtctaattactactgaatcaagt
gaattgtctcttggcgccaccgacttgtatgagaaatttcttactggagtggcaaaaact
ttgctggatactctgcctgcttctgataagtcttttagcagactccttggtgaagctccg
atgttgactgattctgtaatgggactattggagaacctttgctattcaaatttgtcgaat
gtgcgtggaacagattctcgagatgatcgcataactcaaggtcttggggctgtctggagc
ttaattttagggcgtccactaaatcgacaagcctgtttgactatagctctcaagtgtgct
gttcattcagaagatgatactcgtgtgaaggccatccgtttggtttcaaacaaactttat
caactcaactacatatctgaaacgattgagcaatatgccaagaacaagttgctttcagct
gtagaatatacttcagatgctgagacgtccagttctgctggttcaataaaagaagtaggg
gttggtgaagaaacttctgttagtggtactctacattcggattctggtaaattgcatgtc
gtttctcaacctggtcccagcgtgtcattttcagaagctcagcgttatatatctttatat
tttgccctttgcacaaagaagcctgatctccttcagcttgtgtttgatgcctatgcacga
gctggtaaaagtgtgaagcaggctatacatcgtcacgttccgattttattaaggtctttg
gagtcatcatatcctcaattactacgtataatttctgacccacccatgggaagtgaaaac
ttgttaatgctggtgctccagacactggctgaacaaaccattccatcacctgatcttatt
tctaccgtcaaacatctctatgaaactaagttgaaggatgtttctatcctgattccgatg
ctatcttcgctttcaaaaaacgaggttctgcccatattccctcggcttgttgaccttcca
ctcgacaaatttcgactggcacttgctcacatattacagggatcagctcatactggtcca
gcattaacgcctgctgaagttctggttgctatccacgacattgtaccagaaaaagaagga
attgcgcttaaaaaggtaacagaagcttgctcagcttgtttcgaacaacgtactgtgttc
acacatcatgttttggcaaaggctttgaatcagatggttgatcgaactccacttcctcta
ttattcatgagaacagtaatccaggcaattggctccttccctactctggttgattttatc
atggagattctctccaaactcgttgatagacagatctggagaatgccaaagctttgggta
gggtttttgaaatgtatgtcccagacgcagccacattcattccatgttttattgaagtta
ccgtcaccccaactggaaagtgctctaaataaataccctaatctcagaggtccccttgtt
gcttattcaagccagccaaacattatatcttccttaccaagttcaacccttgcgattcta
ggtctttcaagtgaattgcatatgacaaactcacatcctgtaacttctttgcatacatga
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